EWAS Catalog β

The MRC-IEU catalog of epigenome-wide association studies

Search results for PTPN7

 

Author PMID Outcome Exposure Tissue Analysis N CpG Location Gene Beta P
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a fixed effect 2338 cg12436568 chr1:202130728 PTPN7 0.0036 0E+00
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 6y with age as a fixed effect 2338 cg12436568 chr1:202130728 PTPN7 -0.011 0E+00
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a fixed effect 2338 cg15027815 chr1:202131184 PTPN7 0.001 0E+00
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a fixed effect 2338 cg17932662 chr1:202123442 PTPN7 0.004 0E+00
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 6y with age as a fixed effect 2338 cg17932662 chr1:202123442 PTPN7 -0.015 0E+00
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a fixed effect 2338 cg19675731 chr1:202129192 PTPN7 0.00048 0E+00
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a fixed effect 2338 cg23506842 chr1:202130920 PTPN7 0.0017 0E+00
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a fixed effect 2338 cg25754958 chr1:202130692 PTPN7 0.0041 0E+00
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 6y with age as a fixed effect 2338 cg25754958 chr1:202130692 PTPN7 -0.017 0E+00
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg18384097 chr1:202129566 PTPN7 -0.69315 1.6E-187
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg19675731 chr1:202129192 PTPN7 -0.68555 7E-183
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg22008490 chr1:202129255 PTPN7 -0.68267 1.6E-176
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg16266227 chr1:202129204 PTPN7 -0.65709 3.8E-174
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg25746134 chr1:202129865 PTPN7 -0.61694 1.7E-161
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg00903584 chr1:202128682 PTPN7 -0.6134 3E-135
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg23506842 chr1:202130920 PTPN7 -0.44592 6.6E-125
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg15027815 chr1:202131184 PTPN7 -0.3824 3.1E-123
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg03649293 chr1:202129894 PTPN7 -0.45908 3.1E-120
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg12436568 chr1:202130728 PTPN7 -0.34339 1.6E-110
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.179849 6.7E-107
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg01437204 chr1:202130344 PTPN7 -0.27537 1E-95
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg09887955 chr1:202129854 PTPN7 -0.20021 1.8E-93
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg25754958 chr1:202130692 PTPN7 -0.22332 2.4E-91
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.15066 3.2E-75
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.132168 3.6E-58
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg17932662 chr1:202123442 PTPN7 0.12 3.8E-52
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.123379 7.3E-51
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.111063 1.7E-41
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.109644 1.8E-40
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.109613 1.9E-40
Bonder MJ 25282492 DNA methylation Fetal vs adult liver Liver - 195 cg01437204 chr1:202130344 PTPN7 -2.69348 1E-39
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.107384 6.9E-39
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 -0.105824 8.3E-38
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 -0.104391 7.8E-37
Yao C 33752734 DNA methylation Gene expression of Affymetrix ID: 2451155 (gene symbol: PTPN7) Whole blood Meta-analysis 4170 cg01437204 chr1:202130344 PTPN7 NA 8.1E-37
Bonder MJ 25282492 DNA methylation Fetal vs adult liver Liver - 195 cg15027815 chr1:202131184 PTPN7 -2.08174 1.7E-36
Bonder MJ 25282492 DNA methylation Fetal vs adult liver Liver - 195 cg25746134 chr1:202129865 PTPN7 -1.95506 2.7E-36
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.103083 5.9E-36
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 -0.099864 7.8E-34
Josephine Robertson 41361833 DNA methylation P02790 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.0996541 1.1E-33
Bonder MJ 25282492 DNA methylation Fetal vs adult liver Liver - 195 cg23506842 chr1:202130920 PTPN7 -2.27551 3.9E-33
Yao C 33752734 DNA methylation Gene expression of Affymetrix ID: 2451155 (gene symbol: PTPN7) Whole blood Meta-analysis 4170 cg23506842 chr1:202130920 PTPN7 NA 2.7E-32
Bonder MJ 25282492 DNA methylation Fetal vs adult liver Liver - 195 cg19675731 chr1:202129192 PTPN7 -1.64206 4.3E-31
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 -0.0936688 5.9E-30
Bonder MJ 25282492 DNA methylation Fetal vs adult liver Liver - 195 cg22008490 chr1:202129255 PTPN7 -1.81748 1.1E-29
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 -0.0930236 1.5E-29
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.0919912 6E-29
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 -0.0904973 4.6E-28
Wozniak MB 23526956 DNA methylation Clear cell renal carcinoma Clear cell renal carcinoma tumour cells and adjacent healthy cells - 129 cg25746134 chr1:202129865 PTPN7 NA 1.1E-27
Wozniak MB 23526956 DNA methylation Clear cell renal carcinoma Clear cell renal carcinoma tumour cells and adjacent healthy cells - 129 cg00903584 chr1:202128682 PTPN7 NA 1.2E-27
Yao C 33752734 DNA methylation Gene expression of Affymetrix ID: 2451155 (gene symbol: PTPN7) Whole blood Meta-analysis 4170 cg25754958 chr1:202130692 PTPN7 NA 9.3E-27
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0866837 7.1E-26
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 -0.0836528 3.3E-24
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 -0.0830829 6.8E-24
Josephine Robertson 41361833 DNA methylation P02671 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.0827085 1.1E-23
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 -0.0823161 1.7E-23
Josephine Robertson 41361833 DNA methylation P04114 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.082 2.7E-23
Josephine Robertson 41361833 DNA methylation P51884 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.082 2.8E-23
Josephine Robertson 41361833 DNA methylation P01031 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.0810634 8E-23
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident COPD Whole blood Basic model 17902 cg01437204 chr1:202130344 PTPN7 -0.043 2.5E-21
Hannah M. Smith 39706196 DNA methylation HDL cholesterol Whole blood discovery 18225 cg01520554 chr1:202132071 PTPN7 0.25 4.4E-21
Marttila S 25888029 DNA methylation Age group Peripheral blood mononuclear cells - 143 cg01437204 chr1:202130344 PTPN7 -0.98294 4.5E-21
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 2 14671 cg17932662 chr1:202123442 PTPN7 -0.169044 1E-20
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 3 14671 cg17932662 chr1:202123442 PTPN7 -0.167387 2.1E-20
Josephine Robertson 41361833 DNA methylation P04217 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.0758567 3.6E-20
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 -0.0746272 1.4E-19
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.074 1.7E-19
Marttila S 25888029 DNA methylation Age group Peripheral blood mononuclear cells - 143 cg00903584 chr1:202128682 PTPN7 -0.63187357 3.2E-19
Hannah M. Smith 39706196 DNA methylation BMI Whole blood discovery 17304 cg01437204 chr1:202130344 PTPN7 -0.239929 3.4E-19
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 -0.0721218 2.2E-18
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.0717783 3.2E-18
Josephine Robertson 41361833 DNA methylation P04004 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.0716474 3.7E-18
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 -0.0712586 5.6E-18
Battram T 30602389 DNA methylation Tissue Buccal cells and peripheral blood mononuclear cells EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells 215 cg07577934 chr1:202116537 PTPN7 -0.01798 1.1E-17
Robert F. Hillary doi.org/10.1101/2023.11.02.23298000 C-reactive protein (CRP) levels DNA methylation Whole blood Basic model 17936 cg17932662 chr1:202123442 PTPN7 -5.0 1.5E-17
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.069 4.9E-17
Hannah M. Smith 39706196 DNA methylation Waist-hip ratio Whole blood discovery 17304 cg01437204 chr1:202130344 PTPN7 -0.221138 1.5E-16
Hannah M. Smith 39706196 DNA methylation BMI Whole blood discovery 17304 cg01520554 chr1:202132071 PTPN7 -0.219027 2.4E-16
Josephine Robertson 41361833 DNA methylation P00450 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.0675246 2.7E-16
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0670162 4.4E-16
Robert F. Hillary doi.org/10.1101/2023.11.02.23298000 C-reactive protein (CRP) levels DNA methylation Whole blood Basic model 17936 cg01437204 chr1:202130344 PTPN7 -2.2 5E-16
Josephine Robertson 41361833 DNA methylation O75882 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.067 5.5E-16
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0666023 6.7E-16
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 2 14671 cg17932662 chr1:202123442 PTPN7 -0.14733 7.4E-16
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 0.066 7.5E-16
Josephine Robertson 41361833 DNA methylation P02763 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.0657897 1.5E-15
Josephine Robertson 41361833 DNA methylation P00740 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.0654018 2.2E-15
Josephine Robertson 41361833 DNA methylation P04114 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.065 2.8E-15
Josephine Robertson 41361833 DNA methylation P04196 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.065 3E-15
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident COPD Whole blood Basic model 17902 cg12436568 chr1:202130728 PTPN7 -0.03 3.1E-15
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident COPD Whole blood Basic model 17902 cg14174367 chr1:202128508 PTPN7 -0.026 3.3E-15
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 3 14671 cg17932662 chr1:202123442 PTPN7 -0.140298 5E-15
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a fixed effect 2338 cg16266227 chr1:202129204 PTPN7 0.00052 6.9E-15
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 0.064 8.1E-15
Josephine Robertson 41361833 DNA methylation P27169 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.064 1.4E-14
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 2 14671 cg01437204 chr1:202130344 PTPN7 -0.0776864 2.2E-14
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident COPD Whole blood Basic model 17902 cg25754958 chr1:202130692 PTPN7 -0.029 3E-14
Hannah M. Smith 39706196 DNA methylation Body fat Whole blood discovery 17304 cg01437204 chr1:202130344 PTPN7 -0.203487 3.6E-14
Josephine Robertson 41361833 DNA methylation P29622 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.061 1.4E-13
Hannah M. Smith 39706196 DNA methylation Body fat Whole blood discovery 17304 cg01520554 chr1:202132071 PTPN7 -0.197495 1.6E-13
Josephine Robertson 41361833 DNA methylation P29622 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.06 3.2E-13
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident COPD Whole blood Basic model 17902 cg15027815 chr1:202131184 PTPN7 -0.03 3.5E-13
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0598707 3.9E-13
Josephine Robertson 41361833 DNA methylation P27169 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.059 8.4E-13
Josephine Robertson 41361833 DNA methylation P00734 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.058 1.5E-12
Imgenberg-Kreuz J 26857698 DNA methylation Primary Sjogrens syndrome Whole blood Whole blood 500 cg17932662 chr1:202123442 PTPN7 NA 2.6E-12
Kyung WK 32795589 DNA methylation atopy nasal polyp discovery 108 cg17932662 chr1:202123442 PTPN7 -0.037 2.9E-12
Josephine Robertson 41361833 DNA methylation P02671 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0573336 3.7E-12
Josephine Robertson 41361833 DNA methylation P00740 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.057112 4.4E-12
Hannah M. Smith 39706196 DNA methylation HDL cholesterol Whole blood sensitivity 18225 cg01520554 chr1:202132071 PTPN7 0.24 4.5E-12
Josephine Robertson 41361833 DNA methylation P02751 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.057 6.2E-12
Josephine Robertson 41361833 DNA methylation P00734 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 0.057 7.3E-12
Hannah M. Smith 39706196 DNA methylation HDL cholesterol Whole blood discovery 18225 cg01437204 chr1:202130344 PTPN7 0.18 7.5E-12
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident COPD Whole blood Basic model 17902 cg23506842 chr1:202130920 PTPN7 -0.027 9.8E-12
Josephine Robertson 41361833 DNA methylation P00734 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.056 1.1E-11
Josephine Robertson 41361833 DNA methylation P25311 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.0557526 1.4E-11
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 2 14671 cg01437204 chr1:202130344 PTPN7 0.069 1.5E-11
Sikdar S 31536415 DNA methylation Smoking Whole blood, CD4+ T cells, CD14+ monocytes random effects meta-analysis 15907 cg25754958 chr1:202130692 PTPN7 -0.00781 1.6E-11
Hannah M. Smith 39706196 DNA methylation HDL cholesterol Whole blood discovery 18225 cg09360310 chr1:202127398 PTPN7 -0.332448 2.7E-11
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 0.055 3E-11
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 0.054 4.2E-11
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 3 14671 cg17932662 chr1:202123442 PTPN7 -0.119587 4.3E-11
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 3 14671 cg01437204 chr1:202130344 PTPN7 -0.0668235 5E-11
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 2 14671 cg01437204 chr1:202130344 PTPN7 -0.0662438 5.8E-11
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 0.054 6.5E-11
Bohlin J 27717397 DNA methylation Gestational age Cord blood Last menstrual period-estimated gestational age 1068 cg01437204 chr1:202130344 PTPN7 -0.00101954 7.4E-11
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident Type 2 Diabetes Whole blood Basic model 17749 cg01437204 chr1:202130344 PTPN7 -0.035 8.2E-11
Josephine Robertson 41361833 DNA methylation P04004 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.0532864 1.1E-10
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 2 14671 cg17932662 chr1:202123442 PTPN7 -0.117587 1.1E-10
Kyung WK 32795589 DNA methylation eosinophilia nasal polyp discovery 129 cg09360310 chr1:202127398 PTPN7 -0.022 1.2E-10
Josephine Robertson 41361833 DNA methylation P04004 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0529745 1.4E-10
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 0.053 1.6E-10
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 2 14671 cg01437204 chr1:202130344 PTPN7 -0.0637042 2.5E-10
Sikdar S 31536415 DNA methylation Smoking Whole blood, CD4+ T cells, CD14+ monocytes random effects meta-analysis 15907 cg12436568 chr1:202130728 PTPN7 -0.00684 2.8E-10
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 6y with age as a fixed effect 2338 cg15027815 chr1:202131184 PTPN7 -0.0053 2.8E-10
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 2 14671 cg17932662 chr1:202123442 PTPN7 -0.114517 4.5E-10
Josephine Robertson 41361833 DNA methylation P51884 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 0.051 5E-10
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 6y with age as a fixed effect 2338 cg01437204 chr1:202130344 PTPN7 -0.0087 5.4E-10
Josephine Robertson 41361833 DNA methylation P04004 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 -0.0509492 6.6E-10
Josephine Robertson 41361833 DNA methylation P01024 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 0.051 6.6E-10
Josephine Robertson 41361833 DNA methylation P00747 whole blood OSCA model 2 14671 cg16958695 chr1:202131884 PTPN7 -0.0513219 7.1E-10
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 0.051 7.7E-10
Josephine Robertson 41361833 DNA methylation P02790 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 -0.0503966 1E-09
Yao C 33752734 DNA methylation Gene expression of Affymetrix ID: 2451155 (gene symbol: PTPN7) Whole blood Meta-analysis 4170 cg15027815 chr1:202131184 PTPN7 NA 1.2E-09
Josephine Robertson 41361833 DNA methylation B1AHL2 whole blood OSCA model 2 14671 cg14236470 chr1:202131777 PTPN7 0.055 1.4E-09
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident COPD Whole blood Basic model 17902 cg16958695 chr1:202131884 PTPN7 -0.051 1.6E-09
Josephine Robertson 41361833 DNA methylation P02790 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0497656 1.6E-09
Josephine Robertson 41361833 DNA methylation P04004 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 -0.0497046 1.7E-09
Josephine Robertson 41361833 DNA methylation P02647 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.05 1.8E-09
Josephine Robertson 41361833 DNA methylation P04114 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 0.05 1.8E-09
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Prevalent Type 2 Diabetes (Self-report) Whole blood Basic model 18005 cg01437204 chr1:202130344 PTPN7 -0.072 2E-09
Josephine Robertson 41361833 DNA methylation P02763 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 -0.049308 2.3E-09
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 3 14671 cg17932662 chr1:202123442 PTPN7 -0.107958 2.3E-09
Josephine Robertson 41361833 DNA methylation P04275 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0492086 2.5E-09
Josephine Robertson 41361833 DNA methylation P02790 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.0491251 2.6E-09
Josephine Robertson 41361833 DNA methylation P00450 whole blood OSCA model 2 14671 cg17932662 chr1:202123442 PTPN7 -0.108112 4.7E-09
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 0.048 4.7E-09
Josephine Robertson 41361833 DNA methylation P00450 whole blood OSCA model 3 14671 cg17932662 chr1:202123442 PTPN7 -0.107845 5.1E-09
Josephine Robertson 41361833 DNA methylation P00450 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 -0.0482155 5.1E-09
Josephine Robertson 41361833 DNA methylation P01024 whole blood OSCA model 2 14671 cg09360310 chr1:202127398 PTPN7 0.05 5.6E-09
Josephine Robertson 41361833 DNA methylation P04004 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0480955 5.6E-09
Josephine Robertson 41361833 DNA methylation P02763 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.0478835 6.5E-09
Josephine Robertson 41361833 DNA methylation P06727 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.048 6.6E-09
Josephine Robertson 41361833 DNA methylation P02763 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0477284 7.3E-09
Josephine Robertson 41361833 DNA methylation P00747 whole blood OSCA model 1 14671 cg16958695 chr1:202131884 PTPN7 -0.0476357 7.8E-09
Josephine Robertson 41361833 DNA methylation P04003 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.048 7.9E-09
Josephine Robertson 41361833 DNA methylation P00450 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 -0.0474523 8.9E-09
Josephine Robertson 41361833 DNA methylation P00740 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 -0.0473794 9.4E-09
Ligthart S 27955697 DNA methylation C-reactive protein Whole blood Discovery 8863 cg25754958 chr1:202130692 PTPN7 -0.0032 1E-08
Josephine Robertson 41361833 DNA methylation P55056 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.047 1E-08
Josephine Robertson 41361833 DNA methylation P01008 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.047 1.1E-08
Josephine Robertson 41361833 DNA methylation O75636 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.047 1.2E-08
Dogan MV 28686328 DNA methylation Smoking Peripheral blood - 1597 cg12436568 chr1:202130728 PTPN7 -0.52927808 1.2E-08
Josephine Robertson 41361833 DNA methylation P04114 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 0.047 1.4E-08
Josephine Robertson 41361833 DNA methylation P08185 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.047 1.5E-08
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident Type 2 Diabetes Whole blood Basic model 17749 cg01520554 chr1:202132071 PTPN7 -0.031 1.6E-08
Josephine Robertson 41361833 DNA methylation P00450 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.0466227 1.6E-08
Josephine Robertson 41361833 DNA methylation P00740 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 -0.0465998 1.6E-08
Bohlin J 27717397 DNA methylation Gestational age Cord blood Last menstrual period-estimated gestational age 1068 cg17932662 chr1:202123442 PTPN7 -0.00104772 1.6E-08
Josephine Robertson 41361833 DNA methylation P02647 whole blood OSCA model 2 14671 cg01437204 chr1:202130344 PTPN7 0.057 2E-08
Josephine Robertson 41361833 DNA methylation B1AHL2 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 0.046 2.5E-08
Josephine Robertson 41361833 DNA methylation P04114 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 0.046 3.1E-08
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a fixed effect 2338 cg18384097 chr1:202129566 PTPN7 0.00054 3.1E-08
Josephine Robertson 41361833 DNA methylation P29622 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 0.046 3.1E-08
Josephine Robertson 41361833 DNA methylation P02671 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 -0.0456272 3.2E-08
Josephine Robertson 41361833 DNA methylation P00747 whole blood OSCA model 3 14671 cg16958695 chr1:202131884 PTPN7 -0.0461556 3.2E-08
Sikdar S 31536415 DNA methylation Smoking Whole blood, CD4+ T cells, CD14+ monocytes random effects meta-analysis 15907 cg23506842 chr1:202130920 PTPN7 -0.00478 3.4E-08
Josephine Robertson 41361833 DNA methylation P00734 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 0.045 3.6E-08
Josephine Robertson 41361833 DNA methylation P02790 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 -0.0453779 3.8E-08
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 2 14671 cg17932662 chr1:202123442 PTPN7 0.1 4.5E-08
Josephine Robertson 41361833 DNA methylation P00450 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0450897 4.7E-08
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Prevalent COPD (Self-report) Whole blood Basic model 18078 cg01437204 chr1:202130344 PTPN7 -0.044 4.7E-08
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 2 14671 cg14236470 chr1:202131777 PTPN7 0.049 5.1E-08
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a random effect 2338 cg12436568 chr1:202130728 PTPN7 0.0014 5.4E-08
Hannah M. Smith 39706196 DNA methylation HDL cholesterol Whole blood discovery 18225 cg07577934 chr1:202116537 PTPN7 -0.262119 5.6E-08
Josephine Robertson 41361833 DNA methylation P02775 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0448013 5.7E-08
Li S 28811542 DNA methylation Age Whole blood - 1366 cg01437204 chr1:202130344 PTPN7 -0.0112 5.7E-08
Josephine Robertson 41361833 DNA methylation P04196 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 -0.0447468 5.9E-08
Josephine Robertson 41361833 DNA methylation A0A075B6I1 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0446231 6.4E-08
Josephine Robertson 41361833 DNA methylation P51884 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 0.045 6.6E-08
Josephine Robertson 41361833 DNA methylation P02647 whole blood OSCA model 2 14671 cg01520554 chr1:202132071 PTPN7 0.045 6.8E-08
Josephine Robertson 41361833 DNA methylation P00734 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 0.045 6.8E-08
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 3 14671 cg01437204 chr1:202130344 PTPN7 0.054 9E-08
Josephine Robertson 41361833 DNA methylation P78563 whole blood OSCA model 4 14671 cg23506842 chr1:202130920 PTPN7 0.068 9.7E-08
Josephine Robertson 41361833 DNA methylation P06727 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 0.044 1E-07
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 2 14671 cg14236470 chr1:202131777 PTPN7 -0.0481472 1.2E-07
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 4 14671 cg17932662 chr1:202123442 PTPN7 -0.136951 1.2E-07
Hannah M. Smith 39706196 DNA methylation HDL cholesterol Whole blood sensitivity 18225 cg09360310 chr1:202127398 PTPN7 -0.291297 1.5E-07
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 3 14671 cg17932662 chr1:202123442 PTPN7 0.096 1.5E-07
Josephine Robertson 41361833 DNA methylation P29622 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 0.043 1.5E-07
Josephine Robertson 41361833 DNA methylation B1AHL2 whole blood OSCA model 2 14671 cg01437204 chr1:202130344 PTPN7 0.053 1.7E-07
Josephine Robertson 41361833 DNA methylation P27169 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 0.043 1.8E-07
Josephine Robertson 41361833 DNA methylation P04275 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.0431015 1.8E-07
Josephine Robertson 41361833 DNA methylation A0A075B6I1 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.0430887 1.8E-07
Bohlin J 27717397 DNA methylation Gestational age Cord blood Last menstrual period-estimated gestational age 1068 cg15027815 chr1:202131184 PTPN7 -0.00047929 1.9E-07
Josephine Robertson 41361833 DNA methylation B1AHL2 whole blood OSCA model 3 14671 cg14236470 chr1:202131777 PTPN7 0.047 1.9E-07
Josephine Robertson 41361833 DNA methylation P27169 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 0.043 2E-07
Josephine Robertson 41361833 DNA methylation P02671 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 -0.0427524 2.2E-07
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 2 14671 cg15027815 chr1:202131184 PTPN7 -0.0475309 2.3E-07
Josephine Robertson 41361833 DNA methylation P04004 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 0.043 2.6E-07
Josephine Robertson 41361833 DNA methylation P00747 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0424666 2.7E-07
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0424128 2.8E-07
Josephine Robertson 41361833 DNA methylation P04004 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 -0.0424063 2.8E-07
Hannah M. Smith 39706196 DNA methylation HDL cholesterol Whole blood discovery 18225 cg15027815 chr1:202131184 PTPN7 0.12 2.9E-07
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident COPD Whole blood Basic model 17902 cg14236470 chr1:202131777 PTPN7 -0.035 3.2E-07
Robert F. Hillary doi.org/10.1101/2023.11.02.23298000 C-reactive protein (CRP) levels DNA methylation Whole blood Fully-adjusted model 14040 cg17932662 chr1:202123442 PTPN7 -2.9 3.3E-07
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 2 14671 cg12436568 chr1:202130728 PTPN7 -0.0472682 3.4E-07
Josephine Robertson 41361833 DNA methylation P02647 whole blood OSCA model 1 14671 cg01520554 chr1:202132071 PTPN7 0.042 4E-07
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 1 14671 cg07577934 chr1:202116537 PTPN7 -0.0418267 4E-07
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a random effect 2338 cg00903584 chr1:202128682 PTPN7 0.001 4.3E-07
Josephine Robertson 41361833 DNA methylation P02671 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 -0.0416782 4.4E-07
Josephine Robertson 41361833 DNA methylation P02649 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.042 4.5E-07
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 2 14671 cg09360310 chr1:202127398 PTPN7 0.043 4.6E-07
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 1 14671 cg03132634 chr1:202127846 PTPN7 0.042 4.6E-07
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a random effect 2338 cg19675731 chr1:202129192 PTPN7 0.00031 4.8E-07
Josephine Robertson 41361833 DNA methylation Q9BXR6 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.0415102 4.9E-07
Josephine Robertson 41361833 DNA methylation P01031 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0414134 5.2E-07
Josephine Robertson 41361833 DNA methylation P01042 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.041 5.4E-07
Hannah M. Smith 39706196 DNA methylation BMI Whole blood sensitivity 17304 cg09360310 chr1:202127398 PTPN7 0.28 5.6E-07
Josephine Robertson 41361833 DNA methylation P01031 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.0412885 5.7E-07
Josephine Robertson 41361833 DNA methylation P06727 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.041 5.9E-07
Josephine Robertson 41361833 DNA methylation P02790 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0411486 6.2E-07
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 1 14671 cg03132634 chr1:202127846 PTPN7 0.041 6.4E-07
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 1 14671 cg14174367 chr1:202128508 PTPN7 -0.0410408 6.6E-07
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 2 14671 cg25754958 chr1:202130692 PTPN7 -0.0472707 7E-07
Hannah M. Smith 39706196 DNA methylation Total cholesterol Whole blood sensitivity 18270 cg01437204 chr1:202130344 PTPN7 0.2 7E-07
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 2 14671 cg16958695 chr1:202131884 PTPN7 -0.0413539 7.2E-07
Josephine Robertson 41361833 DNA methylation B1AHL2 whole blood OSCA model 2 14671 cg16958695 chr1:202131884 PTPN7 0.041 7.4E-07
Josephine Robertson 41361833 DNA methylation P01008 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 -0.0408385 7.5E-07
Josephine Robertson 41361833 DNA methylation P00740 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0406859 8.2E-07
Josephine Robertson 41361833 DNA methylation P08185 whole blood OSCA model 2 14671 cg16958695 chr1:202131884 PTPN7 -0.040937 8.7E-07
Josephine Robertson 41361833 DNA methylation P02775 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.040525 9.1E-07
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident Type 2 Diabetes Whole blood Basic model 17749 cg15027815 chr1:202131184 PTPN7 -0.024 9.8E-07
Dugue P-A 31789449 Alcohol consumption DNA methylation Whole blood Previous week consumption discovery 5606 cg23506842 chr1:202130920 PTPN7 NA 9.9E-07
Hannah M. Smith 39706196 DNA methylation Body fat Whole blood sensitivity 17304 cg01520554 chr1:202132071 PTPN7 -0.177638 1E-06
Josephine Robertson 41361833 DNA methylation P02751 whole blood OSCA model 3 14671 cg17932662 chr1:202123442 PTPN7 0.089 1.1E-06
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 1 14671 cg16958695 chr1:202131884 PTPN7 0.04 1.1E-06
Josephine Robertson 41361833 DNA methylation P51884 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 0.04 1.1E-06
Josephine Robertson 41361833 DNA methylation P02649 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.04 1.2E-06
Robert F. Hillary doi.org/10.1101/2023.11.02.23298000 C-reactive protein (CRP) levels DNA methylation Whole blood Basic model 17936 cg09360310 chr1:202127398 PTPN7 1.6 1.2E-06
Josephine Robertson 41361833 DNA methylation P00740 whole blood OSCA model 2 14671 cg01437204 chr1:202130344 PTPN7 -0.0492054 1.3E-06
Josephine Robertson 41361833 DNA methylation B1AHL2 whole blood OSCA model 2 14671 cg15027815 chr1:202131184 PTPN7 0.044 1.3E-06
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 9y with age as a fixed effect 2338 cg19675731 chr1:202129192 PTPN7 0.0015 1.3E-06
Josephine Robertson 41361833 DNA methylation P06727 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 -0.039901 1.3E-06
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 3 14671 cg01437204 chr1:202130344 PTPN7 -0.047948 1.4E-06
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 9y with age as a fixed effect 2338 cg16266227 chr1:202129204 PTPN7 0.002 1.4E-06
Josephine Robertson 41361833 DNA methylation P27169 whole blood OSCA model 2 14671 cg01437204 chr1:202130344 PTPN7 0.049 1.5E-06
Josephine Robertson 41361833 DNA methylation P01008 whole blood OSCA model 2 14671 cg09360310 chr1:202127398 PTPN7 -0.0409777 1.5E-06
Josephine Robertson 41361833 DNA methylation P04114 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 0.04 1.5E-06
Josephine Robertson 41361833 DNA methylation P51884 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.04 1.6E-06
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a fixed effect 2338 cg00903584 chr1:202128682 PTPN7 0.00055 1.6E-06
Robert F. Hillary doi.org/10.1101/2023.11.02.23298000 C-reactive protein (CRP) levels DNA methylation Whole blood Basic model 17936 cg01520554 chr1:202132071 PTPN7 -2.3 1.7E-06
Josephine Robertson 41361833 DNA methylation P01718 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0394239 1.8E-06
Sikdar S 31536415 DNA methylation Smoking Whole blood, CD4+ T cells, CD14+ monocytes random effects meta-analysis 15907 cg15027815 chr1:202131184 PTPN7 -0.00406 1.8E-06
Battram T 23177740 DNA methylation Age Whole blood EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE40279 656 cg23506842 chr1:202130920 PTPN7 0.0005 1.9E-06
Josephine Robertson 41361833 DNA methylation P02790 whole blood OSCA model 4 14671 cg17932662 chr1:202123442 PTPN7 -0.12525 1.9E-06
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 2 14671 cg01437204 chr1:202130344 PTPN7 -0.0475409 1.9E-06
Josephine Robertson 41361833 DNA methylation P02790 whole blood OSCA model 2 14671 cg17932662 chr1:202123442 PTPN7 -0.0874477 1.9E-06
Josephine Robertson 41361833 DNA methylation P04217 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 -0.0392657 2E-06
Josephine Robertson 41361833 DNA methylation P51884 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 0.039 2E-06
Josephine Robertson 41361833 DNA methylation P02763 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 -0.0391907 2.1E-06
Josephine Robertson 41361833 DNA methylation P00734 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 0.039 2.1E-06
Darina Czamara 38600394 DNA methylation sex placenta meta-analysis of robust linear regression results per cohort 746 cg09887955 chr1:202129854 PTPN7 0.073 2.2E-06
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a random effect 2338 cg16266227 chr1:202129204 PTPN7 0.00041 2.3E-06
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 2 14671 cg14174367 chr1:202128508 PTPN7 -0.0394323 2.3E-06
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 9y with age as a fixed effect 2338 cg23506842 chr1:202130920 PTPN7 0.0042 2.4E-06
Josephine Robertson 41361833 DNA methylation O75882 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.039 2.5E-06
Josephine Robertson 41361833 DNA methylation P08603 whole blood OSCA model 2 14671 cg01520554 chr1:202132071 PTPN7 -0.0390679 2.5E-06
Sikdar S 31536415 DNA methylation Smoking Whole blood, CD4+ T cells, CD14+ monocytes random effects meta-analysis 15907 cg01437204 chr1:202130344 PTPN7 -0.00458 2.5E-06
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 2 14671 cg12436568 chr1:202130728 PTPN7 -0.0432818 2.6E-06
Josephine Robertson 41361833 DNA methylation Q96PD5 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.039 2.7E-06
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 3 14671 cg01437204 chr1:202130344 PTPN7 -0.0467287 3E-06
Josephine Robertson 41361833 DNA methylation P08185 whole blood OSCA model 3 14671 cg16958695 chr1:202131884 PTPN7 -0.0381117 3E-06
Hannah M. Smith 39706196 DNA methylation BMI Whole blood discovery 17304 cg09360310 chr1:202127398 PTPN7 0.24 3.1E-06
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0384403 3.2E-06
Gross AM 27105112 DNA methylation HIV infection Neutrophils Neutrophils 60 cg25754958 chr1:202130692 PTPN7 -0.522685 3.2E-06
Josephine Robertson 41361833 DNA methylation P00747 whole blood OSCA model 2 14671 cg14236470 chr1:202131777 PTPN7 -0.0421376 3.5E-06
Josephine Robertson 41361833 DNA methylation P55056 whole blood OSCA model 3 14671 cg17932662 chr1:202123442 PTPN7 0.085 3.6E-06
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a random effect 2338 cg25746134 chr1:202129865 PTPN7 0.0005 3.7E-06
Kashima K 33564054 DNA methylation gestational age Cord blood None 110 cg01437204 chr1:202130344 PTPN7 0.0037 3.8E-06
Josephine Robertson 41361833 DNA methylation P02790 whole blood OSCA model 3 14671 cg17932662 chr1:202123442 PTPN7 -0.0846292 3.8E-06
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident Ischemic Heart Disease Whole blood Basic model 17483 cg01437204 chr1:202130344 PTPN7 -0.024 3.9E-06
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 2 14671 cg15027815 chr1:202131184 PTPN7 -0.0421651 3.9E-06
Josephine Robertson 41361833 DNA methylation P08185 whole blood OSCA model 1 14671 cg16958695 chr1:202131884 PTPN7 -0.0380595 4E-06
Josephine Robertson 41361833 DNA methylation P02763 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 -0.038035 4.1E-06
Josephine Robertson 41361833 DNA methylation P00450 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 -0.0380034 4.1E-06
Bohlin J 27717397 DNA methylation Gestational age Cord blood Last menstrual period-estimated gestational age 1068 cg23506842 chr1:202130920 PTPN7 -0.00033202 4.2E-06
Josephine Robertson 41361833 DNA methylation P04003 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.038 4.2E-06
Battram T 27886173 DNA methylation Ulcerative colitis Whole blood EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE87640 163 cg15027815 chr1:202131184 PTPN7 -0.026 4.3E-06
Dugue P-A 31789449 Alcohol consumption DNA methylation Whole blood Previous week consumption discovery 5606 cg00903584 chr1:202128682 PTPN7 NA 4.4E-06
Josephine Robertson 41361833 DNA methylation P04217 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0378743 4.5E-06
Dugue P-A 31789449 Alcohol consumption DNA methylation Whole blood Previous week consumption discovery 5606 cg12436568 chr1:202130728 PTPN7 NA 4.7E-06
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 9y with age as a fixed effect 2338 cg15027815 chr1:202131184 PTPN7 0.0036 4.8E-06
Josephine Robertson 41361833 DNA methylation P78563 whole blood OSCA model 4 14671 cg25754958 chr1:202130692 PTPN7 0.05 5.1E-06
Hannah M. Smith 39706196 DNA methylation BMI Whole blood discovery 17304 cg14236470 chr1:202131777 PTPN7 -0.181087 5.3E-06
Josephine Robertson 41361833 DNA methylation P04003 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 0.038 5.3E-06
Josephine Robertson 41361833 DNA methylation P02751 whole blood OSCA model 2 14671 cg17932662 chr1:202123442 PTPN7 0.084 5.4E-06
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 2 14671 cg16958695 chr1:202131884 PTPN7 0.038 5.4E-06
Josephine Robertson 41361833 DNA methylation P01031 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 -0.0375208 5.5E-06
Josephine Robertson 41361833 DNA methylation P10643 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.037414 5.8E-06
Singmann P 26500701 DNA methylation Sex Whole blood KORA F4 1799 cg12436568 chr1:202130728 PTPN7 NA 6E-06
Hannah M. Smith 39706196 DNA methylation BMI Whole blood sensitivity 17304 cg01520554 chr1:202132071 PTPN7 -0.163086 6.4E-06
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 3 14671 cg14236470 chr1:202131777 PTPN7 -0.0409176 6.5E-06
Robert F. Hillary doi.org/10.1101/2023.11.02.23298000 C-reactive protein (CRP) levels DNA methylation Whole blood Basic model 17936 cg14174367 chr1:202128508 PTPN7 -0.58 6.5E-06
Hannah M. Smith 39706196 DNA methylation HDL cholesterol Whole blood discovery 18225 cg17932662 chr1:202123442 PTPN7 0.26 6.8E-06
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 3 14671 cg09360310 chr1:202127398 PTPN7 0.037 7E-06
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Prevalent Type 2 Diabetes (Self-report) Whole blood Basic model 18005 cg01520554 chr1:202132071 PTPN7 -0.055 7.4E-06
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 2 14671 cg12436568 chr1:202130728 PTPN7 -0.04094 7.5E-06
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 1 14671 cg16266227 chr1:202129204 PTPN7 0.037 7.5E-06
Hannah M. Smith 39706196 DNA methylation BMI Whole blood sensitivity 17304 cg15027815 chr1:202131184 PTPN7 0.15 7.8E-06
Josephine Robertson 41361833 DNA methylation P02790 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 -0.0368602 8E-06
Josephine Robertson 41361833 DNA methylation P00747 whole blood OSCA model 3 14671 cg14236470 chr1:202131777 PTPN7 -0.0405132 8.1E-06
Josephine Robertson 41361833 DNA methylation P55056 whole blood OSCA model 2 14671 cg17932662 chr1:202123442 PTPN7 0.082 8.1E-06
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 9y with age as a random effect 2338 cg19675731 chr1:202129192 PTPN7 0.0011 8.2E-06
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 3 14671 cg14236470 chr1:202131777 PTPN7 0.04 8.2E-06
Josephine Robertson 41361833 DNA methylation P01008 whole blood OSCA model 4 14671 cg09360310 chr1:202127398 PTPN7 -0.0411731 8.5E-06
Josephine Robertson 41361833 DNA methylation P08571 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 -0.0367113 8.7E-06
Josephine Robertson 41361833 DNA methylation P78563 whole blood OSCA model 4 14671 cg15027815 chr1:202131184 PTPN7 0.063 8.7E-06
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a random effect 2338 cg07577934 chr1:202116537 PTPN7 0.00077 8.9E-06
Josephine Robertson 41361833 DNA methylation P00740 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.0366502 9E-06
Josephine Robertson 41361833 DNA methylation P05543 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 -0.0366463 9E-06
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 1 14671 cg16958695 chr1:202131884 PTPN7 -0.0366303 9.1E-06
Josephine Robertson 41361833 DNA methylation P02751 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 0.037 9.3E-06
Josephine Robertson 41361833 DNA methylation P02763 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0365156 9.7E-06
Hannah M. Smith 39706196 DNA methylation Body fat Whole blood discovery 17304 cg09360310 chr1:202127398 PTPN7 0.23 1E-05
Zhang L 33257653 DNA methylation alzheimers disease braak stage Prefrontal cortex Meta-analysis 1030 cg25754958 chr1:202130692 PTPN7 -0.022 1E-05
Josephine Robertson 41361833 DNA methylation P00740 whole blood OSCA model 2 14671 cg01520554 chr1:202132071 PTPN7 -0.0364909 1.1E-05
Josephine Robertson 41361833 DNA methylation O75636 whole blood OSCA model 2 14671 cg16958695 chr1:202131884 PTPN7 -0.0365155 1.2E-05
Josephine Robertson 41361833 DNA methylation P02751 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.036 1.2E-05
Dugue P-A 31789449 Alcohol consumption DNA methylation Whole blood Previous week consumption discovery 5606 cg01437204 chr1:202130344 PTPN7 NA 1.3E-05
Josephine Robertson 41361833 DNA methylation P08603 whole blood OSCA model 1 14671 cg01520554 chr1:202132071 PTPN7 -0.0359697 1.3E-05
Josephine Robertson 41361833 DNA methylation P29622 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 0.036 1.3E-05
Gross AM 27105112 DNA methylation HIV infection Neutrophils Neutrophils 60 cg12436568 chr1:202130728 PTPN7 -0.484252 1.4E-05
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 9y with age as a fixed effect 2338 cg12436568 chr1:202130728 PTPN7 0.0049 1.4E-05
Li S 28811542 DNA methylation Age Whole blood - 1366 cg25754958 chr1:202130692 PTPN7 -0.00857 1.4E-05
Battram T 27886173 DNA methylation Crohn's disease Whole blood EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE87640 161 cg03649293 chr1:202129894 PTPN7 0.055 1.5E-05
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident Lung Cancer Whole blood Basic model 18364 cg14174367 chr1:202128508 PTPN7 -0.0076 1.5E-05
Hannah M. Smith 39706196 DNA methylation HDL cholesterol Whole blood discovery 18225 cg16266227 chr1:202129204 PTPN7 0.13 1.6E-05
Josephine Robertson 41361833 DNA methylation P08571 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 -0.0356333 1.6E-05
Josephine Robertson 41361833 DNA methylation P55056 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.036 1.6E-05
Hannah M. Smith 39706196 DNA methylation HDL cholesterol Whole blood discovery 18225 cg23506842 chr1:202130920 PTPN7 0.096 1.6E-05
Josephine Robertson 41361833 DNA methylation P02775 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 -0.0355647 1.6E-05
Josephine Robertson 41361833 DNA methylation P04217 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.0355551 1.7E-05
Hannah M. Smith 39706196 DNA methylation BMI Whole blood discovery 17304 cg15027815 chr1:202131184 PTPN7 -0.103246 1.7E-05
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 3 14671 cg15027815 chr1:202131184 PTPN7 -0.0394783 1.7E-05
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 4 14671 cg17932662 chr1:202123442 PTPN7 -0.112094 1.7E-05
Zhang L 33257653 DNA methylation alzheimers disease braak stage Prefrontal cortex Meta-analysis 1030 cg22008490 chr1:202129255 PTPN7 -0.031 1.7E-05
Josephine Robertson 41361833 DNA methylation P10643 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 -0.0354766 1.7E-05
Josephine Robertson 41361833 DNA methylation P04004 whole blood OSCA model 2 14671 cg01437204 chr1:202130344 PTPN7 -0.0435918 1.7E-05
Josephine Robertson 41361833 DNA methylation A0A075B6H7 whole blood OSCA model 4 14671 cg15027815 chr1:202131184 PTPN7 0.061 1.7E-05
Josephine Robertson 41361833 DNA methylation P01834 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.035 1.8E-05
Zhang L 33257653 DNA methylation alzheimers disease braak stage Prefrontal cortex Meta-analysis 1030 cg16266227 chr1:202129204 PTPN7 -0.031 1.8E-05
Sikdar S 31536415 DNA methylation Prenatal smoke exposure Cord blood, whole blood Inverse varience-weighted fixed-effects meta-analysis 5648 cg25754958 chr1:202130692 PTPN7 -0.0066 1.8E-05
Witt S 32080920 DNA methylation alcohol withdrawal recovery whole blood discovery 99 cg01520554 chr1:202132071 PTPN7 0.9 1.8E-05
Josephine Robertson 41361833 DNA methylation P02647 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 0.035 1.8E-05
Josephine Robertson 41361833 DNA methylation P01042 whole blood OSCA model 2 14671 cg16958695 chr1:202131884 PTPN7 -0.0356363 1.8E-05
Josephine Robertson 41361833 DNA methylation P27169 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 0.035 1.9E-05
Josephine Robertson 41361833 DNA methylation P19827 whole blood OSCA model 4 14671 cg17932662 chr1:202123442 PTPN7 -0.114124 1.9E-05
Josephine Robertson 41361833 DNA methylation P04003 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 0.035 1.9E-05
Josephine Robertson 41361833 DNA methylation P06727 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 0.035 2E-05
Josephine Robertson 41361833 DNA methylation P02671 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.0352309 2E-05
Josephine Robertson 41361833 DNA methylation P04196 whole blood OSCA model 2 14671 cg09360310 chr1:202127398 PTPN7 -0.0363574 2E-05
Josephine Robertson 41361833 DNA methylation P08603 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 0.035 2E-05
Josephine Robertson 41361833 DNA methylation P04196 whole blood OSCA model 3 14671 cg09360310 chr1:202127398 PTPN7 -0.0363311 2E-05
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident Type 2 Diabetes Whole blood Basic model 17749 cg25754958 chr1:202130692 PTPN7 -0.019 2.1E-05
Josephine Robertson 41361833 DNA methylation B1AHL2 whole blood OSCA model 3 14671 cg16958695 chr1:202131884 PTPN7 0.035 2.1E-05
Josephine Robertson 41361833 DNA methylation A0A087WSY6 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.035 2.1E-05
Josephine Robertson 41361833 DNA methylation P01024 whole blood OSCA model 3 14671 cg09360310 chr1:202127398 PTPN7 0.033 2.3E-05
Battram T 27886173 DNA methylation Ulcerative colitis Whole blood EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE87640 163 cg23506842 chr1:202130920 PTPN7 -0.0315 2.3E-05
Josephine Robertson 41361833 DNA methylation P02775 whole blood OSCA model 2 14671 cg14236470 chr1:202131777 PTPN7 -0.0383222 2.4E-05
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 3 14671 cg12436568 chr1:202130728 PTPN7 -0.0385404 2.5E-05
Josephine Robertson 41361833 DNA methylation P43652 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.035 2.5E-05
Josephine Robertson 41361833 DNA methylation P00734 whole blood OSCA model 2 14671 cg17932662 chr1:202123442 PTPN7 0.078 2.5E-05
Josephine Robertson 41361833 DNA methylation P02671 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0347509 2.6E-05
Hannah M. Smith 39706196 DNA methylation Body fat Whole blood sensitivity 17304 cg09360310 chr1:202127398 PTPN7 0.24 2.7E-05
Gadd DA 35945220 TNFRSF17 protein levels (SeqId = 2665-26) DNA methylation Whole blood SomaScan protein measurement 774 cg01437204 chr1:202130344 PTPN7 -0.52 2.7E-05
Josephine Robertson 41361833 DNA methylation P08571 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.0345828 2.8E-05
Battram T 23177740 DNA methylation Age Whole blood EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE40279 656 cg12436568 chr1:202130728 PTPN7 0.00066 2.8E-05
Josephine Robertson 41361833 DNA methylation P51884 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 -0.0345571 2.8E-05
Singmann P 26500701 DNA methylation Sex Whole blood KORA F4 1799 cg25754958 chr1:202130692 PTPN7 NA 2.9E-05
Josephine Robertson 41361833 DNA methylation P08571 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0345164 2.9E-05
Josephine Robertson 41361833 DNA methylation P00450 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0343893 3.1E-05
Hannah M. Smith 39706196 DNA methylation Waist-hip ratio Whole blood discovery 17304 cg15027815 chr1:202131184 PTPN7 -0.0998197 3.1E-05
Josephine Robertson 41361833 DNA methylation P00734 whole blood OSCA model 3 14671 cg17932662 chr1:202123442 PTPN7 0.077 3.2E-05
Josephine Robertson 41361833 DNA methylation P01031 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 0.034 3.2E-05
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Prevalent COPD (Self-report) Whole blood Basic model 18078 cg15027815 chr1:202131184 PTPN7 -0.03 3.2E-05
Josephine Robertson 41361833 DNA methylation P02750 whole blood OSCA model 1 14671 cg00903584 chr1:202128682 PTPN7 -0.0342847 3.3E-05
Battram T 27886173 DNA methylation Ulcerative colitis Whole blood EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE87640 163 cg25754958 chr1:202130692 PTPN7 -0.034 3.4E-05
Josephine Robertson 41361833 DNA methylation P01762 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0341923 3.4E-05
Mulder RH 33450751 DNA methylation age Whole blood Model 1 with age as a fixed effect 2338 cg07577934 chr1:202116537 PTPN7 -0.00051 3.5E-05
Josephine Robertson 41361833 DNA methylation P06727 whole blood OSCA model 2 14671 cg09360310 chr1:202127398 PTPN7 -0.0351208 3.8E-05
Josephine Robertson 41361833 DNA methylation P01042 whole blood OSCA model 3 14671 cg16958695 chr1:202131884 PTPN7 -0.0344113 3.9E-05
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 4 14671 cg14236470 chr1:202131777 PTPN7 0.059 3.9E-05
Hannah M. Smith 39706196 DNA methylation Waist-hip ratio Whole blood discovery 17304 cg01520554 chr1:202132071 PTPN7 -0.109763 4E-05
Bohlin J 27717397 DNA methylation Gestational age Cord blood Ultrasound-estimated gestational age 1068 cg23506842 chr1:202130920 PTPN7 -0.00026632 4E-05
Josephine Robertson 41361833 DNA methylation P02775 whole blood OSCA model 2 14671 cg15027815 chr1:202131184 PTPN7 -0.037594 4.1E-05
Josephine Robertson 41361833 DNA methylation P00734 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 -0.0337965 4.2E-05
Josephine Robertson 41361833 DNA methylation P06727 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 0.034 4.3E-05
Josephine Robertson 41361833 DNA methylation B1AHL2 whole blood OSCA model 1 14671 cg15027815 chr1:202131184 PTPN7 0.034 4.4E-05
Josephine Robertson 41361833 DNA methylation B1AHL2 whole blood OSCA model 1 14671 cg16958695 chr1:202131884 PTPN7 0.034 4.4E-05
Zhang L 33257653 DNA methylation alzheimers disease braak stage Prefrontal cortex Meta-analysis 1030 cg12436568 chr1:202130728 PTPN7 -0.022 4.5E-05
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 2 14671 cg25754958 chr1:202130692 PTPN7 -0.0384257 4.6E-05
Dugue P-A 31789449 Alcohol consumption DNA methylation Whole blood Previous week consumption discovery 5606 cg15027815 chr1:202131184 PTPN7 NA 4.7E-05
Gross AM 27105112 DNA methylation HIV infection CD4+ T-cells CD4+ T-cells 60 cg01437204 chr1:202130344 PTPN7 -0.479438 4.9E-05
Josephine Robertson 41361833 DNA methylation Q08380 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 0.033 5.1E-05
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 9y with age as a fixed effect 2338 cg25754958 chr1:202130692 PTPN7 0.0043 5.1E-05
Josephine Robertson 41361833 DNA methylation P02649 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 0.033 5.1E-05
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 3 14671 cg01437204 chr1:202130344 PTPN7 -0.0405099 5.2E-05
Josephine Robertson 41361833 DNA methylation P04004 whole blood OSCA model 2 14671 cg01520554 chr1:202132071 PTPN7 -0.033487 5.3E-05
Josephine Robertson 41361833 DNA methylation P00747 whole blood OSCA model 2 14671 cg12436568 chr1:202130728 PTPN7 -0.0373636 5.4E-05
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 1 14671 cg14236470 chr1:202131777 PTPN7 -0.0332693 5.6E-05
Josephine Robertson 41361833 DNA methylation P00747 whole blood OSCA model 2 14671 cg25754958 chr1:202130692 PTPN7 -0.0383132 5.6E-05
Josephine Robertson 41361833 DNA methylation P02775 whole blood OSCA model 3 14671 cg14236470 chr1:202131777 PTPN7 -0.0365755 5.8E-05
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 3 14671 cg12436568 chr1:202130728 PTPN7 -0.0372153 5.8E-05
Josephine Robertson 41361833 DNA methylation P04196 whole blood OSCA model 2 14671 cg17932662 chr1:202123442 PTPN7 0.074 5.9E-05
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 6y with age as a fixed effect 2338 cg00903584 chr1:202128682 PTPN7 -0.0031 6E-05
Josephine Robertson 41361833 DNA methylation B1AHL2 whole blood OSCA model 3 14671 cg01437204 chr1:202130344 PTPN7 0.041 6.1E-05
Josephine Robertson 41361833 DNA methylation P51884 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 0.033 6.1E-05
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 2 14671 cg15027815 chr1:202131184 PTPN7 0.037 6.2E-05
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Incident Osteoarthritis Whole blood Basic model 16114 cg25754958 chr1:202130692 PTPN7 -0.031 6.2E-05
Hannah M. Smith 39706196 DNA methylation Waist-hip ratio Whole blood discovery 17304 cg14236470 chr1:202131777 PTPN7 -0.159128 6.3E-05
Josephine Robertson 41361833 DNA methylation P04114 whole blood OSCA model 1 14671 cg00903584 chr1:202128682 PTPN7 0.033 6.3E-05
Mulder RH 33450751 DNA methylation age Whole blood Model 2 at 9y with age as a random effect 2338 cg16266227 chr1:202129204 PTPN7 0.0014 6.4E-05
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Prevalent COPD (Self-report) Whole blood Basic model 18078 cg14174367 chr1:202128508 PTPN7 -0.023 6.4E-05
Josephine Robertson 41361833 DNA methylation Q96PD5 whole blood OSCA model 2 14671 cg17932662 chr1:202123442 PTPN7 0.074 6.4E-05
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 2 14671 cg12436568 chr1:202130728 PTPN7 -0.036318 6.5E-05
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 1 14671 cg09887955 chr1:202129854 PTPN7 0.033 6.6E-05
Josephine Robertson 41361833 DNA methylation P27169 whole blood OSCA model 3 14671 cg01437204 chr1:202130344 PTPN7 0.04 6.8E-05
Josephine Robertson 41361833 DNA methylation B1AHL2 whole blood OSCA model 3 14671 cg15027815 chr1:202131184 PTPN7 0.036 6.9E-05
Josephine Robertson 41361833 DNA methylation P04275 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 -0.0328262 7E-05
Josephine Robertson 41361833 DNA methylation P01023 whole blood OSCA model 4 14671 cg01437204 chr1:202130344 PTPN7 -0.0678214 7.1E-05
Josephine Robertson 41361833 DNA methylation P01742 whole blood OSCA model 2 14671 cg25754958 chr1:202130692 PTPN7 -0.037585 7.3E-05
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Prevalent COPD (Self-report) Whole blood Basic model 18078 cg17932662 chr1:202123442 PTPN7 -0.074 7.5E-05
Josephine Robertson 41361833 DNA methylation P06727 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 0.033 7.6E-05
Josephine Robertson 41361833 DNA methylation P05160 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 0.033 7.7E-05
Josephine Robertson 41361833 DNA methylation A0A0G2JMB2 whole blood OSCA model 3 14671 cg25754958 chr1:202130692 PTPN7 -0.0376141 7.7E-05
Josephine Robertson 41361833 DNA methylation P04196 whole blood OSCA model 3 14671 cg17932662 chr1:202123442 PTPN7 0.073 7.9E-05
Gadd DA 35945220 TNFRSF17 protein levels (SeqId = 2665-26) DNA methylation Whole blood SomaScan protein measurement 774 cg14174367 chr1:202128508 PTPN7 -0.38 8.2E-05
Josephine Robertson 41361833 DNA methylation P02748 whole blood OSCA model 1 14671 cg07577934 chr1:202116537 PTPN7 -0.0325067 8.2E-05
Josephine Robertson 41361833 DNA methylation Q96PD5 whole blood OSCA model 3 14671 cg17932662 chr1:202123442 PTPN7 0.073 8.3E-05
Josephine Robertson 41361833 DNA methylation P01718 whole blood OSCA model 3 14671 cg01437204 chr1:202130344 PTPN7 -0.0401631 8.4E-05
Gadd DA 35945220 PCOLCE2 protein levels (SeqId = 6081-52) DNA methylation Whole blood SomaScan protein measurement 774 cg07577934 chr1:202116537 PTPN7 -1.03 8.4E-05
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 2 14671 cg12436568 chr1:202130728 PTPN7 0.036 8.7E-05
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Prevalent Colorectal Cancer (Self-report) Whole blood Basic model 18055 cg01437204 chr1:202130344 PTPN7 -0.024 8.7E-05
Josephine Robertson 41361833 DNA methylation P04217 whole blood OSCA model 1 14671 cg12436568 chr1:202130728 PTPN7 -0.0323884 8.7E-05
Josephine Robertson 41361833 DNA methylation P02647 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 0.032 8.7E-05
Josephine Robertson 41361833 DNA methylation P55056 whole blood OSCA model 4 14671 cg17932662 chr1:202123442 PTPN7 0.1 8.9E-05
Josephine Robertson 41361833 DNA methylation P27169 whole blood OSCA model 1 14671 cg25754958 chr1:202130692 PTPN7 0.032 9E-05
Josephine Robertson 41361833 DNA methylation P00450 whole blood OSCA model 1 14671 cg09360310 chr1:202127398 PTPN7 0.032 9.2E-05
Josephine Robertson 41361833 DNA methylation P06396 whole blood OSCA model 4 14671 cg09360310 chr1:202127398 PTPN7 -0.0369469 9.4E-05
Gadd DA 35945220 LTA protein levels (SeqId = 3505-6) DNA methylation Whole blood SomaScan protein measurement 774 cg15027815 chr1:202131184 PTPN7 0.45 9.4E-05
Robert F Hillary 10.1101/2023.01.10.23284387 DNA methylation Prevalent Type 2 Diabetes (Self-report) Whole blood Fully-adjusted model 14350 cg01437204 chr1:202130344 PTPN7 -0.05 9.7E-05
Josephine Robertson 41361833 DNA methylation P18428 whole blood OSCA model 2 14671 cg12436568 chr1:202130728 PTPN7 -0.0357318 9.7E-05
Josephine Robertson 41361833 DNA methylation P10643 whole blood OSCA model 1 14671 cg01437204 chr1:202130344 PTPN7 -0.0321601 9.8E-05
Robert F. Hillary doi.org/10.1101/2023.11.02.23298000 C-reactive protein (CRP) levels DNA methylation Whole blood Fully-adjusted model 14040 cg09360310 chr1:202127398 PTPN7 1.3 9.8E-05
Josephine Robertson 41361833 DNA methylation P02751 whole blood OSCA model 1 14671 cg23506842 chr1:202130920 PTPN7 0.032 9.8E-05
Josephine Robertson 41361833 DNA methylation O95445 whole blood OSCA model 1 14671 cg17932662 chr1:202123442 PTPN7 0.032 9.8E-05
Dugue P-A 31789449 Alcohol consumption DNA methylation Whole blood Previous week consumption discovery 5606 cg25754958 chr1:202130692 PTPN7 NA 9.9E-05

 

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*this tab-deliminated tsv file contains the full set of associations and variables, i.e. those in the downloadable catalog.

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