author	consortium	pmid	date	trait	efo	analysis	source	outcome	exposure	covariates	outcome_units	exposure_units	methylation_array	tissue	further_details	n	n_cohorts	age	sex	ethnicity	cpg	chrpos	chr	pos	gene	type	beta	se	p	details	study_id
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09379601	chr19:12992224	19	12992224	DNASE2	Island	-	-	4.48e-17	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02895995	chr19:7554069	19	7554069	PEX11G	South shore	-	-	6.09e-17	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10633981	chr11:16779768	11	16779768	C11orf58	Open sea	-	-	1.85e-16	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01092528	chr4:76861103	4	76861103	NAAA	Island	-	-	0.00000000000000122	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18082638	chr11:31827757	11	31827757	PAX6	Island	-	-	0.00000000000000384	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14497545	chr4:140754475	4	140754475	MAML3	Open sea	-	-	0.00000000000000456	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02732134	chr10:101732382	10	101732382	DNMBP	Open sea	-	-	0.0000000000000139	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15897635	chr1:220697615	1	220697615	-	North shelf	-	-	0.0000000000000182	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21423973	chr7:72298667	7	72298667	TYW1B;SBDSP	Island	-	-	0.0000000000000182	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17595353	chr2:176951078	2	176951078	-	North shore	-	-	0.0000000000000234	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25009327	chr7:148820504	7	148820504	ZNF425	North shelf	-	-	0.0000000000000919	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08052428	chr9:135996421	9	135996421	RALGDS	Island	-	-	0.00000000000011	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg27404272	chr2:240447293	2	240447293	-	North shore	-	-	0.000000000000208	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12027761	chr17:38279750	17	38279750	MSL1	South shore	-	-	0.000000000000208	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05485520	chr3:45883628	3	45883628	LZTFL1	Island	-	-	0.000000000000254	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23642001	chr8:67025419	8	67025419	-	Island	-	-	0.000000000000293	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06391300	chr11:119600292	11	119600292	PVRL1	South shore	-	-	0.000000000000301	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01614598	chr2:38152364	2	38152364	FAM82A1	Island	-	-	0.000000000000387	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11688874	chr10:28822482	10	28822482	WAC	Island	-	-	0.000000000000407	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15248989	chr19:14682900	19	14682900	NDUFB7	Island	-	-	0.000000000000435	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09403165	chr15:90118814	15	90118814	C15orf42	North shore	-	-	0.000000000000521	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00959118	chr1:169455055	1	169455055	SLC19A2	Island	-	-	0.000000000000639	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg22325196	chr17:47492792	17	47492792	PHB	Open sea	-	-	0.000000000000691	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23055081	chr6:30181315	6	30181315	TRIM26	Island	-	-	0.000000000000776	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04250181	chr12:20966524	12	20966524	SLCO1B3	Open sea	-	-	0.000000000000829	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07283595	chr17:5372003	17	5372003	DHX33	Island	-	-	0.000000000000829	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08258788	chr8:109455865	8	109455865	TTC35	Island	-	-	0.000000000000914	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26067897	chr5:41904347	5	41904347	C5orf51	Island	-	-	0.000000000000944	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11651961	chr2:54197711	2	54197711	PSME4	North shore	-	-	0.000000000000962	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13286318	chr8:57906058	8	57906058	IMPAD1	Island	-	-	0.000000000000962	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25645657	chr5:52776244	5	52776244	FST	Island	-	-	0.000000000000997	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26326615	chr3:18485765	3	18485765	-	Island	-	-	0.00000000000108	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15558129	chr1:219347279	1	219347279	LYPLAL1	Island	-	-	0.00000000000119	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04335562	chr19:2945000	19	2945000	ZNF77	Island	-	-	0.00000000000168	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20973743	chr15:49447782	15	49447782	COPS2;GALK2	South shore	-	-	0.00000000000176	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17144760	chr11:27384507	11	27384507	CCDC34	Island	-	-	0.00000000000188	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23797200	chr17:40174494	17	40174494	NKIRAS2	South shelf	-	-	0.00000000000188	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07449447	chr14:55228808	14	55228808	SAMD4A	South shore	-	-	0.00000000000189	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01334186	chr1:151372572	1	151372572	PSMB4	Island	-	-	0.00000000000211	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11064073	chr4:164253938	4	164253938	NPY1R	South shore	-	-	0.00000000000211	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24485820	chr12:117536718	12	117536718	TESC	Island	-	-	0.00000000000211	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00040446	chr1:40367965	1	40367965	MYCL1	Island	-	-	0.00000000000218	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20623868	chr19:15666885	19	15666885	-	Open sea	-	-	0.00000000000243	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02308712	chr12:52598204	12	52598204	-	Open sea	-	-	0.00000000000263	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20709868	chr19:12992305	19	12992305	DNASE2	Island	-	-	0.00000000000287	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13787029	chr2:42721631	2	42721631	KCNG3	Island	-	-	0.00000000000295	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20913106	chr8:38324522	8	38324522	FGFR1	North shore	-	-	0.00000000000295	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12260146	chr3:33840237	3	33840237	PDCD6IP	Island	-	-	0.00000000000299	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18987274	chr7:132766962	7	132766962	CHCHD3	Island	-	-	0.00000000000299	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03149093	chr19:12035973	19	12035973	ZNF700	Island	-	-	0.00000000000318	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14911132	chr11:61596755	11	61596755	FADS2	South shore	-	-	0.00000000000363	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25757017	chr12:10306462	12	10306462	-	Open sea	-	-	0.00000000000374	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21304211	chr1:112281877	1	112281877	C1orf183	Island	-	-	0.0000000000039	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26907082	chr1:18971840	1	18971840	PAX7	Island	-	-	0.00000000000412	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07647108	chr3:107150444	3	107150444	-	Island	-	-	0.00000000000444	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg27220681	chr17:685915	17	685915	RNMTL1;GLOD4	Island	-	-	0.00000000000444	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09556825	chr13:31736209	13	31736209	HSPH1	Island	-	-	0.00000000000468	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07161888	chr16:53537348	16	53537348	AKTIP	Island	-	-	0.00000000000482	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06679760	chr3:49027156	3	49027156	P4HTM	Island	-	-	0.00000000000506	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09717979	chr4:103790325	4	103790325	UBE2D3;CISD2	Island	-	-	0.00000000000508	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04623165	chr2:10372402	2	10372402	-	Open sea	-	-	0.00000000000568	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10983056	chr13:113344077	13	113344077	ATP11A	Island	-	-	0.00000000000568	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01176458	chr3:27763828	3	27763828	EOMES	Island	-	-	0.00000000000575	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05977109	chr10:52178181	10	52178181	SGMS1	Island	-	-	0.00000000000654	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18219180	chr2:204800350	2	204800350	ICOS	Open sea	-	-	0.00000000000702	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16101278	chr6:6648823	6	6648823	LY86	Open sea	-	-	0.00000000000721	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19571046	chr19:12175719	19	12175719	ZNF844	Island	-	-	0.00000000000738	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12922032	chr2:32582209	2	32582209	BIRC6	Island	-	-	0.00000000000775	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23223044	chr19:49990882	19	49990882	RPL13AP5;RPL13A	Island	-	-	0.00000000000892	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10581632	chr12:56360715	12	56360715	CDK2;SILV	Island	-	-	0.00000000000904	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26348180	chr3:193852754	3	193852754	HES1	North shore	-	-	0.00000000000937	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13501090	chr1:115212659	1	115212659	DENND2C	Island	-	-	0.00000000000952	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06812693	chr4:26323246	4	26323246	RBPJ	South shore	-	-	0.00000000000961	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17024643	chr1:214725274	1	214725274	PTPN14	Island	-	-	0.00000000000983	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21397124	chr4:11386127	4	11386127	-	Open sea	-	-	0.00000000000999	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03043160	chr13:76056444	13	76056444	TBC1D4	Island	-	-	0.0000000000116	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24293614	chr22:43807429	22	43807429	MPPED1	Island	-	-	0.000000000013	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02996269	chr4:106394692	4	106394692	PPA2	Island	-	-	0.0000000000136	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09047471	chr8:56792345	8	56792345	LYN	Island	-	-	0.0000000000146	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21638374	chr5:147763491	5	147763491	FBXO38	Island	-	-	0.0000000000148	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20034209	chr17:66287369	17	66287369	ARSG;SLC16A6	Island	-	-	0.0000000000152	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21942256	chr3:156892528	3	156892528	-	North shore	-	-	0.0000000000154	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13512204	chr9:78506874	9	78506874	PCSK5	Island	-	-	0.0000000000161	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05736393	chr2:74775957	2	74775957	LOXL3	North shore	-	-	0.0000000000184	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25828872	chr2:179058612	2	179058612	OSBPL6	Island	-	-	0.0000000000187	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04193218	chr4:20701691	4	20701691	PACRGL	North shore	-	-	0.0000000000189	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13531588	chr14:75725958	14	75725958	-	Island	-	-	0.0000000000207	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03447967	chr2:45163099	2	45163099	-	North shore	-	-	0.0000000000257	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06742800	chr2:27255708	2	27255708	TMEM214	Island	-	-	0.0000000000271	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13810766	chr7:151542452	7	151542452	PRKAG2	Open sea	-	-	0.0000000000283	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10625758	chr17:73851514	17	73851514	WBP2	Island	-	-	0.0000000000316	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25683204	chr20:34129839	20	34129839	ERGIC3	Island	-	-	0.000000000033	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03312572	chr7:17979929	7	17979929	SNX13	Island	-	-	0.0000000000388	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03258011	chr17:54857409	17	54857409	-	North shore	-	-	0.0000000000405	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16261730	chr1:24742018	1	24742018	NIPAL3	North shore	-	-	0.0000000000428	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18802567	chr5:171433913	5	171433913	FBXW11	Island	-	-	0.0000000000435	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03766703	chr19:46393454	19	46393454	MYPOP	South shelf	-	-	0.0000000000494	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10505247	chr1:207226475	1	207226475	PFKFB2	Island	-	-	0.00000000005	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19890431	chr11:3659810	11	3659810	ART5	North shelf	-	-	0.0000000000521	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23922560	chr14:37117375	14	37117375	-	Island	-	-	0.0000000000535	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20494553	chr4:71554112	4	71554112	UTP3	Island	-	-	0.0000000000583	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14530304	chr17:77777792	17	77777792	-	Island	-	-	0.0000000000635	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23359048	chr12:2921757	12	2921757	ITFG2	North shore	-	-	0.0000000000656	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16404530	chr2:98964691	2	98964691	CNGA3	South shore	-	-	0.0000000000662	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16141325	chr8:90914397	8	90914397	OSGIN2	Island	-	-	0.0000000000763	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10227327	chr14:62584037	14	62584037	FLJ43390	Island	-	-	0.0000000000763	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02511809	chr5:112073544	5	112073544	APC	Open sea	-	-	0.0000000000783	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08092446	chr19:58987653	19	58987653	ZNF446	Island	-	-	0.0000000000956	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26817334	chr2:119613580	2	119613580	-	Island	-	-	0.000000000103	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11079354	chr6:27740361	6	27740361	-	Open sea	-	-	0.000000000103	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20000718	chr4:41869433	4	41869433	-	Island	-	-	0.000000000105	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04371633	chr14:65381025	14	65381025	CHURC1	North shore	-	-	0.000000000111	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg27473538	chr4:15780522	4	15780522	CD38	Island	-	-	0.000000000112	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00345230	chr4:151936469	4	151936469	LRBA	North shore	-	-	0.000000000113	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00319567	chr13:60971258	13	60971258	TDRD3	Island	-	-	0.000000000116	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11553596	chr7:128338932	7	128338932	-	Open sea	-	-	0.000000000117	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12963096	chr13:39612675	13	39612675	NHLRC3;C13orf23	Island	-	-	0.000000000117	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01519350	chr3:137906342	3	137906342	ARMC8	Island	-	-	0.000000000118	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16864700	chr12:31226536	12	31226536	DDX11	Island	-	-	0.000000000118	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02905964	chr19:29704262	19	29704262	UQCRFS1	Island	-	-	0.000000000125	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16593921	chr8:6693344	8	6693344	XKR5	South shore	-	-	0.000000000127	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25591664	chr5:79551865	5	79551865	SERINC5	Island	-	-	0.000000000129	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02038173	chr21:34852701	21	34852701	TMEM50B	Island	-	-	0.000000000131	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13645767	chr9:97766849	9	97766849	C9orf3	Island	-	-	0.000000000132	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13777502	chr17:66031814	17	66031814	KPNA2	Island	-	-	0.000000000132	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24806732	chr17:7608859	17	7608859	EFNB3	Island	-	-	0.000000000134	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26880762	chr12:123943063	12	123943063	SNRNP35	South shore	-	-	0.000000000136	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06513149	chr13:33002431	13	33002431	N4BP2L1	South shore	-	-	0.000000000136	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21144462	chr17:42082647	17	42082647	PYY;NAGS	Island	-	-	0.000000000136	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08204369	chr17:73150733	17	73150733	HN1	Island	-	-	0.000000000138	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15103181	chr19:35454479	19	35454479	ZNF792	Island	-	-	0.000000000138	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05052194	chr1:2160249	1	2160249	SKI	Island	-	-	0.000000000142	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07450219	chr17:78428858	17	78428858	-	Island	-	-	0.000000000148	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00297767	chr21:40721426	21	40721426	HMGN1	Island	-	-	0.00000000015	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04721582	chr2:178257292	2	178257292	LOC100130691;AGPS	Island	-	-	0.000000000151	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03515980	chr2:105488847	2	105488847	-	Island	-	-	0.000000000154	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20164915	chr1:149871167	1	149871167	BOLA1	Island	-	-	0.000000000166	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09766628	chr17:4634728	17	4634728	MED11	Island	-	-	0.000000000167	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13938963	chr4:68411314	4	68411314	CENPC1	Island	-	-	0.000000000176	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04152921	chr16:47495445	16	47495445	PHKB;ITFG1	South shore	-	-	0.000000000176	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21284370	chr13:42621865	13	42621865	DGKH	Island	-	-	0.000000000178	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07899451	chr1:157108248	1	157108248	ETV3	Island	-	-	0.000000000184	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08905496	chr1:165414332	1	165414332	RXRG	Open sea	-	-	0.000000000184	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01374398	chr3:47516975	3	47516975	SCAP	North shore	-	-	0.000000000186	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18615184	chr17:61678500	17	61678500	TACO1	Island	-	-	0.000000000186	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06994813	chr7:82792357	7	82792357	PCLO	Island	-	-	0.000000000193	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09302904	chr17:62340561	17	62340561	TEX2	Island	-	-	0.000000000193	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06194536	chr1:220701829	1	220701829	MARK1	Island	-	-	0.000000000196	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10459717	chr5:6633577	5	6633577	NSUN2;SRD5A1	Island	-	-	0.000000000197	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21776568	chr13:95254007	13	95254007	GPR180	Island	-	-	0.000000000197	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25613101	chr22:38577875	22	38577875	PLA2G6	Island	-	-	0.00000000022	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12444684	chr1:65431340	1	65431340	JAK1	North shore	-	-	0.000000000235	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15242061	chr7:90226535	7	90226535	-	South shore	-	-	0.000000000235	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12241367	chr10:13203349	10	13203349	MCM10	North shore	-	-	0.000000000237	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02551910	chr10:12110991	10	12110991	DHTKD1	Island	-	-	0.000000000255	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05492810	chr11:78129288	11	78129288	GAB2	Island	-	-	0.000000000274	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08257600	chr19:41199188	19	41199188	ADCK4	South shelf	-	-	0.000000000291	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23243902	chr11:117049849	11	117049849	SIDT2	Island	-	-	0.000000000306	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01941274	chr14:50234650	14	50234650	KLHDC2	Island	-	-	0.000000000324	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg27379715	chr2:875990	2	875990	-	Open sea	-	-	0.00000000034	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17035366	chr12:40499623	12	40499623	SLC2A13	Island	-	-	0.00000000035	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19613905	chr15:56757180	15	56757180	MNS1	Island	-	-	0.00000000035	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11888381	chr3:184053532	3	184053532	FAM131A	North shore	-	-	0.000000000352	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08642237	chr15:45694386	15	45694386	SPATA5L1	North shore	-	-	0.000000000358	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17059624	chr11:85358760	11	85358760	TMEM126A	North shore	-	-	0.000000000399	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04459753	chr16:28858035	16	28858035	TUFM	Island	-	-	0.000000000431	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15869463	chr17:62777690	17	62777690	LOC146880	Island	-	-	0.000000000438	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16154073	chr3:32433121	3	32433121	CMTM7	Island	-	-	0.000000000439	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15656470	chr6:29134247	6	29134247	-	South shore	-	-	0.000000000449	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26622699	chr17:46628303	17	46628303	HOXB3	Island	-	-	0.00000000046	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14183907	chr9:136114344	9	136114344	-	Open sea	-	-	0.000000000488	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18481683	chr19:39574911	19	39574911	PAPL	Island	-	-	0.000000000495	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08269986	chr1:35735167	1	35735167	ZMYM4	South shore	-	-	0.000000000544	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26600954	chr7:23719792	7	23719792	C7orf46	Island	-	-	0.000000000614	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23606758	chr1:52869977	1	52869977	ORC1L;PRPF38A	Island	-	-	0.000000000637	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05393509	chr6:30294475	6	30294475	TRIM39;HCG18	Island	-	-	0.000000000639	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08125401	chr15:74726457	15	74726457	SEMA7A	Island	-	-	0.000000000665	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08005411	chr12:69753742	12	69753742	YEATS4	Island	-	-	0.000000000672	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26506725	chr6:31587990	6	31587990	BAT2	Island	-	-	0.000000000688	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05732725	chr18:59712034	18	59712034	PIGN	Open sea	-	-	0.00000000072	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg27247697	chr2:87018054	2	87018054	CD8A	Island	-	-	0.000000000723	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18538297	chr19:58892579	19	58892579	ZNF837	Island	-	-	0.000000000723	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18404039	chr20:3184938	20	3184938	DDRGK1	Island	-	-	0.000000000749	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04205664	chr7:139209511	7	139209511	CLEC2L	South shore	-	-	0.000000000768	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08820231	chr12:58013687	12	58013687	SLC26A10	North shore	-	-	0.000000000768	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg27183454	chr6:28547741	6	28547741	SCAND3	Open sea	-	-	0.00000000077	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03637614	chr7:129691233	7	129691233	ZC3HC1	Island	-	-	0.000000000773	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18169128	chr14:53619322	14	53619322	DDHD1	Island	-	-	0.000000000773	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00185336	chr7:73153699	7	73153699	ABHD11	Island	-	-	0.000000000793	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16758970	chr13:28527699	13	28527699	-	North shore	-	-	0.000000000793	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16656864	chr17:27718261	17	27718261	TAOK1	South shore	-	-	0.000000000793	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12929040	chr8:56792373	8	56792373	LYN	Island	-	-	0.000000000796	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08409451	chr16:2273123	16	2273123	E4F1	North shore	-	-	0.000000000833	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg27128322	chr18:43547338	18	43547338	KIAA1632	Island	-	-	0.000000000856	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00366471	chr15:71184982	15	71184982	LRRC49;THAP10	South shore	-	-	0.000000000862	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17951138	chr5:92908392	5	92908392	FLJ42709	Island	-	-	0.000000000865	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26420824	chr1:28562883	1	28562883	ATPIF1	Island	-	-	0.000000000878	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26639561	chr12:58239492	12	58239492	CTDSP2	Island	-	-	0.000000000881	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20089531	chr14:92573973	14	92573973	ATXN3	South shore	-	-	0.000000000896	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18877862	chr22:43116932	22	43116932	A4GALT	Island	-	-	0.000000000896	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09098825	chr3:47866946	3	47866946	DHX30	South shore	-	-	0.0000000009	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05796321	chr1:92950348	1	92950348	GFI1	Island	-	-	0.000000000921	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06766273	chr11:62521983	11	62521983	ZBTB3	South shore	-	-	0.000000000921	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06510410	chr3:196594695	3	196594695	SENP5	Island	-	-	0.000000000926	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25561913	chr10:77161129	10	77161129	ZNF503;C10orf41	Island	-	-	0.000000000943	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26164151	chr11:44749353	11	44749353	-	Island	-	-	0.00000000103	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07291923	chr2:28113263	2	28113263	BRE;RBKS;LOC100302650	Island	-	-	0.00000000104	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08843001	chr8:30891486	8	30891486	WRN;PURG	Open sea	-	-	0.00000000105	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14770570	chr17:73975813	17	73975813	ACOX1;C17orf106	South shore	-	-	0.00000000109	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21625563	chr22:39152448	22	39152448	UNC84B	Island	-	-	0.00000000111	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09337544	chr22:38857452	22	38857452	-	North shore	-	-	0.00000000119	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18266479	chr6:30419005	6	30419005	-	Island	-	-	0.00000000124	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01101773	chr3:15901650	3	15901650	ANKRD28	Island	-	-	0.00000000128	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20237920	chr15:76225808	15	76225808	FBXO22OS;FBXO22	Open sea	-	-	0.00000000128	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05246190	chr22:50330022	22	50330022	-	Island	-	-	0.00000000132	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21292957	chr21:34602922	21	34602922	IFNAR2	Island	-	-	0.00000000134	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08031094	chr2:54013912	2	54013912	LOC100302652;ASB3;ERLEC1	Island	-	-	0.00000000137	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg22870994	chr11:71340352	11	71340352	-	Open sea	-	-	0.00000000138	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05106659	chr4:152682899	4	152682899	PET112L	South shore	-	-	0.00000000141	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16422343	chr6:36564708	6	36564708	SFRS3	South shelf	-	-	0.00000000141	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01213331	chr16:15069449	16	15069449	PDXDC1	Island	-	-	0.00000000141	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18011078	chr7:1971098	7	1971098	MAD1L1	South shore	-	-	0.00000000146	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10515414	chr1:15650268	1	15650268	FHAD1	Open sea	-	-	0.00000000148	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07757959	chr15:79165367	15	79165367	MORF4L1	Island	-	-	0.00000000148	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21515243	chr18:21033072	18	21033072	RIOK3	Island	-	-	0.00000000149	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23164678	chr6:83775487	6	83775487	UBE2CBP	Island	-	-	0.0000000015	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00611675	chr8:128748464	8	128748464	MYC	Island	-	-	0.00000000152	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26323130	chr2:149632683	2	149632683	KIF5C	Island	-	-	0.00000000159	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18635645	chr1:85667791	1	85667791	SYDE2	South shore	-	-	0.00000000165	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14848555	chr1:171750797	1	171750797	METTL13	Island	-	-	0.00000000169	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01910272	chr3:52489346	3	52489346	TNNC1;NISCH	North shore	-	-	0.00000000169	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23886783	chr2:113403248	2	113403248	SLC20A1	Island	-	-	0.00000000177	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02467765	chr4:78978708	4	78978708	FRAS1	Island	-	-	0.00000000186	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11932640	chr4:4861200	4	4861200	MSX1	North shore	-	-	0.00000000188	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07237590	chr20:62526788	20	62526788	DNAJC5	South shore	-	-	0.00000000188	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20604317	chr20:4129314	20	4129314	SMOX	North shore	-	-	0.00000000189	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01736133	chr4:120605519	4	120605519	-	Open sea	-	-	0.0000000019	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25857710	chr3:139654740	3	139654740	CLSTN2	Island	-	-	0.00000000191	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19387006	chr6:45345784	6	45345784	SUPT3H;RUNX2	Island	-	-	0.00000000204	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12098645	chr12:69326716	12	69326716	CPM	North shore	-	-	0.00000000204	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09319020	chr17:7304467	17	7304467	-	North shelf	-	-	0.00000000205	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03648631	chr4:103749307	4	103749307	UBE2D3	Island	-	-	0.00000000213	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12261117	chr19:70918	19	70918	-	Island	-	-	0.00000000218	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14837635	chr1:116943616	1	116943616	C1orf203;ATP1A1	Open sea	-	-	0.00000000222	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24303698	chr19:46367351	19	46367351	SYMPK;FOXA3	North shore	-	-	0.00000000224	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18827097	chr2:3522506	2	3522506	ADI1	Island	-	-	0.00000000228	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25856120	chr17:46970223	17	46970223	ATP5G1	South shore	-	-	0.00000000233	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18159740	chr13:30881703	13	30881703	KATNAL1	Island	-	-	0.00000000236	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01930417	chr11:122855023	11	122855023	-	Island	-	-	0.00000000241	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09372808	chr1:167791030	1	167791030	ADCY10	South shore	-	-	0.00000000248	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18441082	chr5:16466057	5	16466057	ZNF622	Island	-	-	0.00000000252	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26105015	chr3:122745099	3	122745099	SEMA5B	North shore	-	-	0.00000000268	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04414295	chr14:102606318	14	102606318	WDR20;HSP90AA1	Island	-	-	0.0000000027	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg22270384	chr19:12848240	19	12848240	ASNA1	North shore	-	-	0.00000000273	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17861791	chr1:113162073	1	113162073	ST7L;CAPZA1	Island	-	-	0.00000000275	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25921418	chr6:31621008	6	31621008	BAT3	Island	-	-	0.00000000287	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26168400	chr2:202316215	2	202316215	STRADB;TRAK2	Island	-	-	0.0000000029	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14087168	chr1:156450669	1	156450669	MEF2D	Open sea	-	-	0.00000000295	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18500431	chr7:1709489	7	1709489	-	Island	-	-	0.00000000295	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08723977	chr5:85577255	5	85577255	NBPF22P	Open sea	-	-	0.000000003	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17502989	chr6:153451486	6	153451486	RGS17	Island	-	-	0.000000003	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23176270	chr14:23476067	14	23476067	C14orf93	Island	-	-	0.00000000319	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17772342	chr5:134871686	5	134871686	NEUROG1	Island	-	-	0.00000000324	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15321108	chr14:102227943	14	102227943	PPP2R5C	Island	-	-	0.00000000324	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg27179111	chr16:3627489	16	3627489	NLRC3	Open sea	-	-	0.00000000324	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15100630	chr6:30524468	6	30524468	PRR3;GNL1	Island	-	-	0.00000000329	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09477292	chr4:6577027	4	6577027	MAN2B2	Island	-	-	0.00000000336	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05478497	chr12:4274287	12	4274287	-	Island	-	-	0.00000000339	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25231972	chr10:31608136	10	31608136	ZEB1;LOC220930	Island	-	-	0.0000000035	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03462975	chr6:33172517	6	33172517	HSD17B8	Island	-	-	0.00000000351	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06210054	chr1:36173658	1	36173658	-	Island	-	-	0.00000000356	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26151079	chr11:58345687	11	58345687	ZFP91;LPXN;ZFP91-CNTF	Island	-	-	0.00000000356	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21099776	chr17:17739742	17	17739742	SREBF1	Island	-	-	0.00000000356	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26057840	chr20:62677629	20	62677629	-	North shore	-	-	0.00000000356	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07022953	chr1:27527861	1	27527861	-	North shore	-	-	0.00000000366	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17554502	chr17:44271559	17	44271559	-	South shore	-	-	0.00000000376	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09705531	chr12:133525532	12	133525532	ZNF605	Open sea	-	-	0.00000000389	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07796520	chr18:5296200	18	5296200	ZFP161	Island	-	-	0.00000000407	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26683639	chr6:30653755	6	30653755	KIAA1949	North shore	-	-	0.0000000042	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11733294	chr11:118123053	11	118123053	MPZL3	Open sea	-	-	0.00000000426	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25837350	chr11:61584442	11	61584442	FADS1	Island	-	-	0.00000000435	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17015704	chr6:119400380	6	119400380	FAM184A	South shore	-	-	0.0000000044	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14905632	chr17:38333933	17	38333933	RAPGEFL1	Island	-	-	0.00000000442	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07326438	chr11:57194562	11	57194562	SLC43A3	Island	-	-	0.00000000443	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08924777	chr16:48278166	16	48278166	LONP2	Island	-	-	0.00000000448	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00405769	chr4:187539852	4	187539852	FAT1	Open sea	-	-	0.00000000466	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13093793	chr14:35099518	14	35099518	SNX6	South shore	-	-	0.00000000466	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26180732	chr17:13972513	17	13972513	COX10	North shore	-	-	0.00000000466	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26576155	chr15:85201829	15	85201829	NMB	South shore	-	-	0.00000000467	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15879179	chr4:164088111	4	164088111	NAF1	Island	-	-	0.00000000483	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg22433398	chr13:27825486	13	27825486	RPL21;RPL21P28	Island	-	-	0.00000000493	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13088939	chr1:155659111	1	155659111	DAP3;YY1AP1	Island	-	-	0.00000000498	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01356463	chr12:112280204	12	112280204	C12orf47;MAPKAPK5	Island	-	-	0.00000000501	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17809276	chr1:172501547	1	172501547	C1orf9	North shore	-	-	0.00000000502	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg27282530	chr3:125898680	3	125898680	ALDH1L1	Island	-	-	0.00000000503	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04240971	chr2:202031356	2	202031356	-	Open sea	-	-	0.00000000508	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24451422	chr1:23751210	1	23751210	TCEA3	Island	-	-	0.0000000051	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06124224	chr1:99470709	1	99470709	LPPR5	Island	-	-	0.00000000512	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04930982	chr6:149202328	6	149202328	UST	South shelf	-	-	0.00000000517	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07830086	chr19:18107778	19	18107778	KCNN1	North shore	-	-	0.00000000518	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01969796	chr4:750851	4	750851	PCGF3	North shore	-	-	0.00000000526	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24321688	chr19:39393347	19	39393347	NFKBIB	North shelf	-	-	0.00000000526	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08722104	chr11:47448306	11	47448306	PSMC3	South shore	-	-	0.0000000053	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16079347	chr9:100265181	9	100265181	TMOD1	Island	-	-	0.00000000533	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19795556	chr10:60494185	10	60494185	BICC1	Open sea	-	-	0.00000000558	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10059171	chr1:147400607	1	147400607	GPR89B	Island	-	-	0.00000000564	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16944159	chr2:62132759	2	62132759	COMMD1	Open sea	-	-	0.00000000566	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01460276	chr8:18871817	8	18871817	PSD3	Island	-	-	0.00000000566	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20318726	chr4:13549621	4	13549621	LOC285548	Island	-	-	0.00000000567	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04468334	chr7:149414901	7	149414901	KRBA1	North shore	-	-	0.00000000568	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17150246	chr1:161068070	1	161068070	KLHDC9	Island	-	-	0.00000000589	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14935078	chr19:17414399	19	17414399	ABHD8	Island	-	-	0.00000000599	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25837738	chr7:148725785	7	148725785	PDIA4	Island	-	-	0.00000000601	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg22062659	chr8:70747431	8	70747431	SLCO5A1	Island	-	-	0.00000000604	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12250883	chr12:63328707	12	63328707	PPM1H	Island	-	-	0.00000000614	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09890653	chr11:113931305	11	113931305	ZBTB16	Island	-	-	0.00000000623	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26434548	chr7:129074607	7	129074607	FAM40B	Island	-	-	0.00000000635	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07791468	chr2:31492359	2	31492359	-	Open sea	-	-	0.00000000651	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25876975	chr15:77363192	15	77363192	TSPAN3	Island	-	-	0.00000000654	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09975850	chr8:65711396	8	65711396	CYP7B1	Island	-	-	0.00000000668	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21282054	chr17:76127608	17	76127608	TMC8;TMC6	Island	-	-	0.00000000673	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25376393	chr8:143957809	8	143957809	CYP11B1	Open sea	-	-	0.00000000715	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10466987	chr17:76921528	17	76921528	TIMP2	Island	-	-	0.00000000717	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06744057	chr14:73493715	14	73493715	ZFYVE1	Island	-	-	0.00000000721	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18382893	chr6:30139641	6	30139641	TRIM15	North shore	-	-	0.00000000723	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04925841	chr12:24715491	12	24715491	SOX5	Island	-	-	0.00000000723	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19977691	chr22:50480018	22	50480018	TTLL8	North shelf	-	-	0.00000000742	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12989020	chr6:157098657	6	157098657	ARID1B	Open sea	-	-	0.0000000075	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21171314	chr11:16628640	11	16628640	-	Island	-	-	0.0000000075	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20956633	chr20:19997839	20	19997839	NAA20	Island	-	-	0.00000000769	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05725489	chr7:600658	7	600658	PRKAR1B	North shore	-	-	0.00000000776	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11227075	chr10:52750930	10	52750930	PRKG1	North shore	-	-	0.00000000823	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20250396	chr14:65880036	14	65880036	FUT8;LOC645431	Island	-	-	0.00000000827	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03758392	chr3:184870408	3	184870408	C3orf70	Island	-	-	0.00000000841	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01550055	chr1:119543216	1	119543216	-	Island	-	-	0.00000000848	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg22854549	chr19:5904785	19	5904785	VMAC;NDUFA11	Island	-	-	0.00000000848	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10905877	chr3:42845934	3	42845934	HIGD1A	Island	-	-	0.00000000851	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14212738	chr11:82783003	11	82783003	RAB30	Open sea	-	-	0.00000000856	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15799226	chr15:68115192	15	68115192	-	North shore	-	-	0.00000000858	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14957430	chr2:64995219	2	64995219	-	Island	-	-	0.0000000086	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14397416	chr15:78219273	15	78219273	LOC645752	Open sea	-	-	0.0000000089	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20730634	chr19:37709434	19	37709434	-	South shore	-	-	0.00000000897	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23705487	chr8:91013396	8	91013396	DECR1	Island	-	-	0.00000000928	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02317763	chr16:67753188	16	67753188	GFOD2	Island	-	-	0.0000000094	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19869610	chr19:45996498	19	45996498	RTN2	North shore	-	-	0.00000000941	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg27161463	chr11:118123074	11	118123074	MPZL3	Open sea	-	-	0.00000000952	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26820911	chr4:83720044	4	83720044	SCD5	Island	-	-	0.0000000096	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01737507	chr5:122372093	5	122372093	PPIC	Island	-	-	0.00000000963	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05590156	chr5:14183868	5	14183868	TRIO	Open sea	-	-	0.00000000995	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03150409	chr4:1892317	4	1892317	WHSC1	Open sea	-	-	0.0000000102	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05303728	chr8:32078368	8	32078368	NRG1	Open sea	-	-	0.0000000102	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09012784	chr1:109584868	1	109584868	WDR47	Island	-	-	0.0000000103	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10880177	chr5:1729256	5	1729256	-	Island	-	-	0.0000000103	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00787537	chr1:211307839	1	211307839	KCNH1	South shore	-	-	0.0000000104	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24902113	chr13:33160718	13	33160718	PDS5B	Island	-	-	0.0000000106	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10988041	chr14:38060564	14	38060564	FOXA1	North shore	-	-	0.0000000107	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15192143	chr17:77787315	17	77787315	-	Island	-	-	0.0000000111	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21242584	chr8:25041785	8	25041785	DOCK5	North shore	-	-	0.0000000112	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13960352	chr19:45826863	19	45826863	CKM	Island	-	-	0.0000000112	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01684248	chr16:86536239	16	86536239	-	North shelf	-	-	0.0000000113	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04871364	chr1:6501062	1	6501062	ESPN	Island	-	-	0.0000000114	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19171792	chr12:3427463	12	3427463	-	Open sea	-	-	0.0000000114	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19226203	chr22:29833658	22	29833658	RFPL1S;RFPL1	Open sea	-	-	0.0000000114	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg22798468	chr1:225150341	1	225150341	DNAH14	Open sea	-	-	0.0000000116	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24095222	chr5:161178787	5	161178787	-	Open sea	-	-	0.0000000118	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03148428	chr7:156433416	7	156433416	C7orf13;RNF32	Island	-	-	0.0000000121	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04364463	chr1:37498270	1	37498270	GRIK3	North shore	-	-	0.0000000123	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10633147	chr2:68384753	2	68384753	WDR92;PNO1	Island	-	-	0.0000000124	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12619612	chr7:100428744	7	100428744	-	South shelf	-	-	0.0000000126	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13997788	chr2:46593223	2	46593223	EPAS1	Open sea	-	-	0.0000000127	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03245111	chr7:76253113	7	76253113	POMZP3;LOC100133091	North shelf	-	-	0.0000000128	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15739717	chr3:136537790	3	136537790	TMEM22	Island	-	-	0.0000000131	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15889012	chr2:44059266	2	44059266	ABCG5	South shore	-	-	0.0000000133	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg27650678	chr11:66636318	11	66636318	PC	Open sea	-	-	0.0000000134	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14733031	chr19:17904427	19	17904427	B3GNT3	North shore	-	-	0.0000000134	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01775802	chr14:72945461	14	72945461	RGS6	Open sea	-	-	0.0000000136	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18782651	chr7:65969785	7	65969785	-	North shore	-	-	0.0000000137	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19534005	chr17:75939819	17	75939819	-	Open sea	-	-	0.0000000138	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19819285	chr19:58545290	19	58545290	ZSCAN1	Island	-	-	0.0000000138	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12627537	chr22:43485414	22	43485414	TTLL1	Island	-	-	0.0000000138	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16163697	chr1:113498742	1	113498742	SLC16A1	Island	-	-	0.000000014	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07949612	chr2:69664562	2	69664562	NFU1	Island	-	-	0.0000000142	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21980338	chr4:331929	4	331929	ZNF141	Island	-	-	0.0000000142	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19835839	chr12:120966954	12	120966954	COQ5	Island	-	-	0.0000000143	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02867857	chr16:88941494	16	88941494	CBFA2T3	North shore	-	-	0.0000000145	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23378609	chr5:178054312	5	178054312	CLK4	Island	-	-	0.0000000147	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07482222	chr19:3465714	19	3465714	-	South shore	-	-	0.0000000149	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15153914	chr20:44563668	20	44563668	PCIF1	Island	-	-	0.0000000152	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08995662	chr19:17137689	19	17137689	CPAMD8	Open sea	-	-	0.0000000156	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25135004	chr1:167522579	1	167522579	CREG1	Island	-	-	0.0000000157	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20179222	chr3:120461682	3	120461682	GTF2E1;RABL3	Open sea	-	-	0.0000000162	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01988500	chr16:3030808	16	3030808	PKMYT1	Island	-	-	0.0000000162	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05681148	chr13:28195812	13	28195812	POLR1D;LNX2	Island	-	-	0.0000000167	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17720267	chr12:6580010	12	6580010	VAMP1	Island	-	-	0.0000000169	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07700962	chr1:174968950	1	174968950	CACYBP	Island	-	-	0.000000017	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24883642	chr15:40226588	15	40226588	EIF2AK4	Island	-	-	0.0000000173	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15421363	chr5:131826865	5	131826865	IRF1	Island	-	-	0.0000000177	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13241473	chr6:41703039	6	41703039	TFEB	Island	-	-	0.0000000177	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21153962	chr11:57102758	11	57102758	SSRP1	North shore	-	-	0.0000000177	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07113562	chr10:52834093	10	52834093	PRKG1	Island	-	-	0.0000000179	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24413235	chr2:27851648	2	27851648	CCDC121;GPN1	Open sea	-	-	0.0000000182	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23215275	chr13:19301347	13	19301347	-	South shore	-	-	0.0000000182	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09757127	chr1:3810632	1	3810632	C1orf174	South shore	-	-	0.0000000185	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14291009	chr22:18560618	22	18560618	PEX26	Island	-	-	0.0000000187	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07284286	chr16:58662935	16	58662935	CNOT1	North shore	-	-	0.0000000188	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24127861	chr14:24640947	14	24640947	REC8	North shore	-	-	0.0000000189	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13565624	chr19:913277	19	913277	C19orf22	Island	-	-	0.000000019	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24258125	chr22:44287772	22	44287772	PNPLA5	Island	-	-	0.0000000199	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02339752	chr16:86549705	16	86549705	-	Island	-	-	0.0000000205	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18080401	chr12:49365529	12	49365529	WNT10B	South shore	-	-	0.0000000206	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03410231	chr7:143042798	7	143042798	CLCN1	Island	-	-	0.0000000207	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15859278	chr4:39770439	4	39770439	UBE2K	North shore	-	-	0.000000021	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24061580	chr7:151573966	7	151573966	PRKAG2	Island	-	-	0.000000021	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11564483	chr6:37401398	6	37401398	FTSJD2	South shore	-	-	0.000000022	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25053798	chr4:89206063	4	89206063	PPM1K	Island	-	-	0.0000000227	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20015168	chr14:57046681	14	57046681	C14orf101	Island	-	-	0.0000000227	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26015973	chr10:103599705	10	103599705	KCNIP2	North shelf	-	-	0.0000000229	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01722584	chr20:5451695	20	5451695	LOC643406	Open sea	-	-	0.0000000236	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04358685	chr3:12598421	3	12598421	MKRN2	Island	-	-	0.0000000242	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20884636	chr2:172290779	2	172290779	DCAF17;METTL8	Island	-	-	0.0000000243	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15352431	chr2:226896008	2	226896008	-	Open sea	-	-	0.0000000245	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14347670	chr6:41908995	6	41908995	CCND3	Island	-	-	0.0000000245	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg22805909	chr14:96967825	14	96967825	PAPOLA	North shore	-	-	0.0000000245	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21950287	chr19:54385441	19	54385441	PRKCG	Island	-	-	0.0000000246	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19484645	chr6:4995292	6	4995292	RPP40	Open sea	-	-	0.0000000249	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13325330	chr6:44355541	6	44355541	CDC5L	Island	-	-	0.0000000251	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12162201	chr21:48055631	21	48055631	PRMT2	Island	-	-	0.0000000254	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12832228	chr8:28244096	8	28244096	ZNF395	Island	-	-	0.0000000258	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09562174	chr16:87811505	16	87811505	-	North shore	-	-	0.0000000264	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26770187	chr3:14693171	3	14693171	C3orf19	Island	-	-	0.0000000265	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13501181	chr3:167967446	3	167967446	C3orf50	Island	-	-	0.0000000268	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08935299	chr12:123011730	12	123011730	KNTC1;RSRC2	Island	-	-	0.0000000271	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15260268	chr12:53613892	12	53613892	RARG	Island	-	-	0.0000000279	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05492964	chr12:53835262	12	53835262	PRR13	North shore	-	-	0.000000028	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12878213	chr20:17550481	20	17550481	DSTN	Island	-	-	0.000000028	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08516222	chr3:153840255	3	153840255	SGEF	Island	-	-	0.0000000286	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24038058	chr6:1611745	6	1611745	FOXC1	Island	-	-	0.0000000287	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg22488745	chr15:53096763	15	53096763	-	North shore	-	-	0.0000000287	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08948898	chr15:74428991	15	74428991	ISLR2	South shore	-	-	0.000000029	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00774457	chr2:58479214	2	58479214	-	South shore	-	-	0.0000000291	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02548780	chr16:22020026	16	22020026	C16orf52	Island	-	-	0.0000000294	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02394512	chr11:94245735	11	94245735	-	Island	-	-	0.0000000298	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11815914	chr18:59992350	18	59992350	TNFRSF11A	Island	-	-	0.0000000302	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08173533	chr4:106756925	4	106756925	GSTCD	Open sea	-	-	0.0000000304	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24517252	chr1:249200781	1	249200781	PGBD2	South shore	-	-	0.0000000305	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08040170	chr16:18812977	16	18812977	ARL6IP1	Island	-	-	0.0000000307	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05654404	chr1:45452166	1	45452166	EIF2B3	Island	-	-	0.0000000311	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00498163	chr2:242821619	2	242821619	-	North shore	-	-	0.0000000311	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23783653	chr6:27059850	6	27059850	-	Open sea	-	-	0.0000000311	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23453437	chr7:148892747	7	148892747	ZNF282	Island	-	-	0.0000000311	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04684553	chr8:89339819	8	89339819	MMP16	North shore	-	-	0.0000000311	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24824725	chr10:97453973	10	97453973	TCTN3	Island	-	-	0.0000000314	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg22471230	chr3:154797779	3	154797779	MME	Island	-	-	0.0000000321	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg22435132	chr17:59312558	17	59312558	BCAS3	Open sea	-	-	0.0000000322	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23218665	chr1:11159850	1	11159850	EXOSC10	Island	-	-	0.0000000323	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24950336	chr3:113464879	3	113464879	ATP6V1A;NAA50	Island	-	-	0.0000000325	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12950166	chr12:122517149	12	122517149	MLXIP	Island	-	-	0.000000033	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05190577	chr11:61062843	11	61062843	VWCE	Island	-	-	0.0000000334	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08795320	chr16:66982803	16	66982803	-	Island	-	-	0.0000000337	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19269264	chr2:238600693	2	238600693	LRRFIP1	Island	-	-	0.0000000341	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16574871	chr8:97165770	8	97165770	GDF6	North shelf	-	-	0.0000000342	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04581293	chr3:156889197	3	156889197	-	North shelf	-	-	0.0000000343	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20547653	chr2:108603456	2	108603456	SLC5A7	Island	-	-	0.0000000345	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16822387	chr11:31831591	11	31831591	PAX6	North shore	-	-	0.0000000347	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19752602	chr5:153039227	5	153039227	GRIA1	Open sea	-	-	0.0000000351	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09015484	chr9:96929106	9	96929106	-	Island	-	-	0.0000000356	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02559264	chr11:73490474	11	73490474	-	North shore	-	-	0.0000000356	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09656541	chr10:115932823	10	115932823	C10orf118	North shore	-	-	0.0000000357	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06551493	chr7:77166702	7	77166702	PTPN12	Island	-	-	0.0000000359	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17246714	chr3:55519186	3	55519186	WNT5A	Island	-	-	0.000000036	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24863706	chr4:120549163	4	120549163	PDE5A	Island	-	-	0.0000000362	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08452348	chr5:134303703	5	134303703	CATSPER3	Open sea	-	-	0.0000000362	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10850054	chr5:55290839	5	55290839	IL6ST	Island	-	-	0.0000000369	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19344263	chr19:58919951	19	58919951	ZNF584	Island	-	-	0.0000000369	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09897639	chr1:178063342	1	178063342	RASAL2;LOC100302401	Island	-	-	0.0000000375	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12046629	chr8:59466299	8	59466299	SDCBP	South shore	-	-	0.0000000378	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10981770	chr1:38272531	1	38272531	C1orf122;YRDC	North shore	-	-	0.0000000379	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02934500	chr4:142557404	4	142557404	IL15	Island	-	-	0.0000000382	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08502652	chr6:168592971	6	168592971	-	South shore	-	-	0.0000000389	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13554667	chr10:62538283	10	62538283	CDK1;CDC2	Island	-	-	0.0000000389	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10335230	chr11:134628434	11	134628434	-	North shelf	-	-	0.0000000392	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10570662	chr22:19159548	22	19159548	-	Island	-	-	0.0000000403	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24377330	chr3:149375961	3	149375961	WWTR1	Island	-	-	0.000000041	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21714212	chr6:30647104	6	30647104	KIAA1949	Open sea	-	-	0.000000041	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04699668	chr2:132109931	2	132109931	-	North shore	-	-	0.0000000418	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08440556	chr4:83718952	4	83718952	SCD5	North shore	-	-	0.000000042	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03284310	chr10:124894415	10	124894415	HMX3	Island	-	-	0.0000000425	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00811382	chr7:97821315	7	97821315	LMTK2	North shelf	-	-	0.0000000433	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18187726	chr12:69080414	12	69080414	NUP107	North shore	-	-	0.0000000435	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02180424	chr14:48095779	14	48095779	MDGA2	Open sea	-	-	0.0000000449	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05301818	chr8:125385252	8	125385252	TMEM65	Island	-	-	0.0000000453	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11806528	chr1:113051977	1	113051977	WNT2B	Island	-	-	0.0000000458	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23598419	chr2:25391042	2	25391042	POMC	North shore	-	-	0.0000000463	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16449659	chr4:153701590	4	153701590	TIGD4;ARFIP1	South shore	-	-	0.0000000463	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09314708	chr11:132812991	11	132812991	OPCML	Island	-	-	0.0000000463	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01338834	chr21:40720919	21	40720919	HMGN1	Island	-	-	0.0000000463	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14312959	chr17:79008933	17	79008933	FLJ90757;BAIAP2	Island	-	-	0.000000047	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15684724	chr8:67875033	8	67875033	-	Island	-	-	0.0000000475	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17157516	chr1:35332203	1	35332203	DLGAP3	Island	-	-	0.0000000483	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25142100	chr6:151547095	6	151547095	-	Open sea	-	-	0.0000000484	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24430189	chr2:128173685	2	128173685	-	Island	-	-	0.0000000494	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12457721	chr3:129822854	3	129822854	LOC729375	Open sea	-	-	0.0000000497	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg18122310	chr12:50236657	12	50236657	BCDIN3D	Island	-	-	0.0000000497	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11788103	chr19:12833533	19	12833533	TNPO2	Island	-	-	0.0000000499	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16361301	chr1:218519549	1	218519549	TGFB2	Island	-	-	0.0000000513	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01411982	chr11:134123293	11	134123293	THYN1;ACAD8	Island	-	-	0.0000000516	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23872756	chr20:42543407	20	42543407	TOX2	Island	-	-	0.0000000519	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04558166	chr1:210001279	1	210001279	C1orf107	Island	-	-	0.0000000528	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16963286	chr7:33102443	7	33102443	NT5C3	Island	-	-	0.000000053	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03147627	chr4:83956202	4	83956202	COPS4	Open sea	-	-	0.0000000536	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06824641	chr8:22298455	8	22298455	PPP3CC	Island	-	-	0.0000000548	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg16435539	chr3:39851009	3	39851009	MYRIP	North shore	-	-	0.0000000555	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20264566	chr11:10316295	11	10316295	SBF2	Island	-	-	0.0000000557	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09320595	chr6:31478822	6	31478822	MICB	Open sea	-	-	0.0000000559	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20518154	chr20:39318705	20	39318705	MAFB	Island	-	-	0.0000000571	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg02158565	chr7:150788256	7	150788256	AGAP3	South shelf	-	-	0.0000000573	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26144629	chr1:207926000	1	207926000	CD46	South shore	-	-	0.0000000578	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00645593	chr10:35930499	10	35930499	FZD8	Island	-	-	0.0000000587	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13326048	chr6:28641863	6	28641863	-	Open sea	-	-	0.0000000592	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03465513	chr13:28550046	13	28550046	-	Island	-	-	0.0000000603	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg00087005	chr10:126848218	10	126848218	CTBP2	Island	-	-	0.0000000604	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10592245	chr1:215256451	1	215256451	KCNK2	Island	-	-	0.0000000615	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13817083	chr7:159026609	7	159026609	-	South shelf	-	-	0.0000000616	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12223960	chr6:32063403	6	32063403	TNXB	North shore	-	-	0.0000000619	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07919028	chr12:4554480	12	4554480	FGF6	Island	-	-	0.0000000619	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg20683799	chr1:63989117	1	63989117	ITGB3BP;EFCAB7	Open sea	-	-	0.0000000629	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11706469	chr10:103535362	10	103535362	FGF8	North shore	-	-	0.000000064	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10548355	chr11:70129868	11	70129868	PPFIA1;MIR548K	Open sea	-	-	0.0000000643	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13758310	chr4:1834493	4	1834493	LETM1	Open sea	-	-	0.0000000647	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24009109	chr3:47018482	3	47018482	CCDC12	South shore	-	-	0.0000000651	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14728310	chr19:9879317	19	9879317	ZNF846	Island	-	-	0.0000000655	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03486485	chr11:14927004	11	14927004	-	Island	-	-	0.0000000659	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25428810	chr11:49839836	11	49839836	-	South shore	-	-	0.0000000659	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07047601	chr22:21337040	22	21337040	LZTR1	South shore	-	-	0.0000000667	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04600792	chr7:29256702	7	29256702	CHN2	Open sea	-	-	0.000000068	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05975845	chr20:47538463	20	47538463	ARFGEF2	Island	-	-	0.0000000704	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21846305	chr12:45270304	12	45270304	NELL2	Island	-	-	0.0000000715	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26135012	chr11:110583599	11	110583599	ARHGAP20	Island	-	-	0.0000000729	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10909163	chr13:41635251	13	41635251	WBP4	Island	-	-	0.000000073	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24105280	chr12:6797846	12	6797846	ZNF384	North shore	-	-	0.0000000745	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09938490	chr15:44088809	15	44088809	SERINC4	North shelf	-	-	0.0000000745	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08344081	chr6:41339785	6	41339785	-	Island	-	-	0.000000075	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05003666	chr11:8102717	11	8102717	TUB	Island	-	-	0.000000077	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08466051	chr2:166810428	2	166810428	TTC21B	Island	-	-	0.0000000775	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg08557876	chr16:81130217	16	81130217	GCSH;LOC100329108	Island	-	-	0.0000000775	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg14932796	chr17:55038330	17	55038330	COIL	Island	-	-	0.0000000786	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25355465	chr20:36576591	20	36576591	-	South shelf	-	-	0.0000000795	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21761427	chr6:28220064	6	28220064	ZKSCAN4	South shore	-	-	0.0000000796	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg26156860	chr19:34287218	19	34287218	KCTD15	Island	-	-	0.0000000807	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23850707	chr15:55582494	15	55582494	RAB27A	Island	-	-	0.0000000823	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg04948475	chr4:69810056	4	69810056	UGT2A3	Open sea	-	-	0.000000083	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24657816	chr4:1140440	4	1140440	-	South shore	-	-	0.000000083	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10300729	chr10:65284527	10	65284527	REEP3	South shelf	-	-	0.0000000841	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg11725182	chr1:5968678	1	5968678	NPHP4	Open sea	-	-	0.0000000851	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09460490	chr13:113829357	13	113829357	-	Open sea	-	-	0.0000000852	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19608455	chr18:48086580	18	48086580	MAPK4	Island	-	-	0.0000000853	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06425136	chr16:31040922	16	31040922	-	North shelf	-	-	0.000000086	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg17665931	chr19:38894173	19	38894173	FAM98C	Island	-	-	0.0000000861	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg09112371	chr6:33240090	6	33240090	VPS52;RPS18	Island	-	-	0.0000000865	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05494465	chr13:74710406	13	74710406	-	South shore	-	-	0.0000000865	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg07243700	chr1:100731457	1	100731457	RTCD1	North shore	-	-	0.0000000881	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg12666107	chr1:31381697	1	31381697	SDC3	Island	-	-	0.0000000893	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25614094	chr8:54164374	8	54164374	OPRK1	Island	-	-	0.0000000898	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg05426700	chr16:998082	16	998082	LMF1	Open sea	-	-	0.0000000899	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg24396566	chr4:52904500	4	52904500	SGCB	Island	-	-	0.0000000905	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg10921517	chr11:1520881	11	1520881	HCCA2	Open sea	-	-	0.000000091	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01976034	chr3:57313955	3	57313955	ASB14	Open sea	-	-	0.000000093	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg15044954	chr7:89874365	7	89874365	C7orf63	Island	-	-	0.0000000934	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg03178691	chr11:66629022	11	66629022	PC	South shore	-	-	0.0000000939	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg06974483	chr4:124317831	4	124317831	SPRY1	North shore	-	-	0.0000000943	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25228510	chr10:62538235	10	62538235	CDK1;CDC2	Island	-	-	0.0000000944	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23616126	chr1:247463678	1	247463678	ZNF496	North shore	-	-	0.0000000964	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg01123250	chr2:210673545	2	210673545	UNC80	Island	-	-	0.0000000966	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg21304062	chr17:78075816	17	78075816	GAA	South shore	-	-	0.0000000969	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg23274247	chr7:38358683	7	38358683	-	Open sea	-	-	0.0000000979	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg25787812	chr6:31478830	6	31478830	MICB	Open sea	-	-	0.0000000981	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13602813	chr3:13920840	3	13920840	WNT7A	Island	-	-	0.0000000988	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg13977374	chr9:86152905	9	86152905	FRMD3	Island	-	-	0.0000000988	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery
Alvizi L	-	28550290	2017-05-26	Non-syndromic cleft lip and palate	EFO_0003959, HP_0000175	Discovery	Table S1	Non-syndromic cleft lip and palate	DNA methylation	Age, sex, cell counts and technical covariates	-	Beta values	Illumina HumanMethylation450	Whole blood	-	126	1	6	Both	European,Other	cg19824334	chr17:73851399	17	73851399	WBP2	Island	-	-	0.0000000998	-	28550290_nonsyndromic_cleft_lip_and_palate_discovery