author	consortium	pmid	date	trait	efo	analysis	source	outcome	exposure	covariates	outcome_units	exposure_units	methylation_array	tissue	further_details	n	n_cohorts	age	sex	ethnicity	cpg	chrpos	chr	pos	gene	type	beta	se	p	details	study_id
Mulder RH	ALSPAC,Generation R	33450751	25/01/2021	age	EFO_0000246	Model 1 with age as a fixed effect	http://epidelta.mrcieu.ac.uk/	DNA methylation	age	sex,gestational age,cohort,cell composition (reference based),batch effects	Beta Values	years	Illumina HumanMethylation450	Whole blood	None	2338	2	Children	Both	European	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	0.0039	0.00023	0	None	33450751_Mulder-RH_age_model_1_with_age_as_a_fixed_effect
Mulder RH	ALSPAC,Generation R	33450751	25/01/2021	age	EFO_0000246	Model 2 at 6y with age as a fixed effect	http://epidelta.mrcieu.ac.uk/	DNA methylation	age	sex,gestational age,cohort,cell composition (reference based),batch effects	Beta Values	years	Illumina HumanMethylation450	Whole blood	None	2338	2	Children	Both	European	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	-0.02	0.0014	0	None	33450751_Mulder-RH_age_model_2_at_6y_with_age_as_a_fixed_effect
Battram T	GEO	30602389	2020-09-15	Tissue	None	EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE124366. Tissue types are buccal epithelial cells and peripheral blood mononuclear cells	None	DNA methylation	Tissue	Batch effects, cell composition (reference free)	Beta Values	None	Illumina HumanMethylation450	Buccal cells and peripheral blood mononuclear cells	None	215	1	Children	Both	European	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	0.53993	0.00889	1e-127	None	30602389_Battram-T_tissue_ewas_catalog_re-analysis_of_geo_data__geo_accession_id_is_gse124366__tissue_types_are_buccal_epithelial_cells_and_peripheral_blood_mononuclear_cells
Wozniak MB	-	23526956	2013-03-05	Clear cell renal carcinoma	EFO_0000349, EFO_0000681	-	Table S6	DNA methylation	Clear cell renal carcinoma	-	M values	-	Illumina HumanMethylation450	Clear cell renal carcinoma tumour cells and adjacent healthy cells	-	129	1	63	Both	European	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	-	-	4.21e-25	-	23526956_clear_cell_renal_carcinoma
Bonder MJ	-	25282492	2014-10-04	Fetal vs adult liver	UBERON_0002107, GO_0048513	-	Additional file 2	DNA methylation	Fetal vs adult liver	Sex and technical covariates	M values	-	Illumina HumanMethylation450	Liver	-	195	2	-	Missing	None	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	-1.98654	0.18299	7.39e-18	-	25282492_fetal_vs_adult_liver
Zhang L	ROSMAP,Mt Sinai,London,Gasparoni	33257653	2020-11-30	alzheimers disease braak stage	EFO_0000249	Meta-analysis	Supplementary Data 1	DNA methylation	alzheimers disease braak stage	age, sex, cell composition (reference based), batch effects	Beta Values	Braak stage	Illumina HumanMethylation450	Prefrontal cortex	age 73-86	1030	4	Adults	Both	European	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	0.08	0.009	1.7e-17	None	33257653_Zhang-L_alzheimers_disease_braak_stage_meta-analysis
Kashima K	None	33564054	2021-02-09	gestational age	EFO_0005112	None	Supplementary Table 6	DNA methylation	gestational age	sex, batch effects, cell composition (reference based), cesarean section, maternal pre-pregnancy bmi, maternal smoking before pregnancy, chorioamnionitis, idiopathic premature rupture of the membrane, preeclampsia	Beta Values	weeks	Illumina HumanMethylation450	Cord blood	None	110	1	Infants	Both	East Asian	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	0.014	0.0016	0.000000000000017	None	33564054_Kashima-K_gestational_age
Bohlin J	-	27717397	2016-10-07	Gestational age	EFO_0005112	Last menstrual period-estimated gestational age	Table S2	DNA methylation	Gestational age	Offspring sex, maternal age, maternal smoking, study design, caesarean section and cell counts	Beta values	days	Illumina HumanMethylation450	Cord blood	-	1068	1	0	Both	European	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	0.00087011	0.00011278	0.0000000000000276	-	27717397_gestational_age_last_menstrual_periodestimated_gestational_age
De Jager PL	-	25129075	2014-08-17	Burden of neuritic amyloid plaques	EFO_0000249, EFO_0006801	Discovery model 3	Table S2	DNA methylation	Burden of neuritic amyloid plaques	Age, sex, study, cell counts, technical covariates	Beta values	-	Illumina HumanMethylation450	Cerebral cortex	Model additionally adjusted for estimated cell counts and surrogate variables	708	2	88	Both	None	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	3.08	0.4309	0.000000000000879	-	25129075_burden_of_neuritic_amyloid_plaques_discovery_model_3
Gross AM	-	27105112	2016-04-21	HIV infection	EFO_0000764	Discovery	Table S2	DNA methylation	HIV infection	Age and cell counts	-	-	Illumina HumanMethylation450	Whole blood	-	181	1	46.5	Males	European	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	-2.44188	0.3568	0.00000000000767	-	27105112_hiv_infection_discovery
Smith R	London 1, London 2, Mount Sinai, Arizona 1, Arizona 2, ROS/MAP	34112773	06-10-2021	Braak stage	EFO_0000249	Discovery	Table 2	DNA methylation	Braak stage	Age, Sex, Batch effects, neuron/glia proportion, surrogate variables	Beta values	None	Illumina HumanMethylation450	Cortex	None	1408	6	Geriatrics	Both	European, African	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	0.0217	0.0034	0.00000000022	None	34112773_Smith-R_braak_stage_discovery
Zhang L	ROSMAP, Mt. Sinai, London, Gasparoni	33902726	04-26-2021	Braak stage	EFO_0000249	Females	Table S3	DNA methylation	Braak stage	Age, Cell composition (reference based), Batch effects,	M values	None	Illumina HumanMethylation450	Prefrontal cortex	None	642	4	Geriatrics	Females	Unclear	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	0.164	0.027	0.00000000085	None	33902726_Zhang-L_braak_stage_females
Bohlin J	-	27717397	2016-10-07	Gestational age	EFO_0005112	Ultrasound-estimated gestational age	Table S1	DNA methylation	Gestational age	Offspring sex, maternal age, maternal smoking, study design, caesarean section and cell counts	Beta values	days	Illumina HumanMethylation450	Cord blood	-	1068	1	0	Both	European	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	0.00072099	0.00012655	0.0000000158	-	27717397_gestational_age_ultrasoundestimated_gestational_age
De Jager PL	-	25129075	2014-08-17	Alzheimers disease	EFO_0000249, EFO_0006801	Discovery	Table S2	Alzheimers disease	DNA methylation	Age, sex, study and technical covariates	-	Beta values	Illumina HumanMethylation450	Cerebral cortex	-	708	2	88	Both	European	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	10.8	1.9881	0.0000000556	-	25129075_alzheimers_disease_discovery
Battram T	GEO	25282492	2020-09-15	Age	EFO_0000246	EWAS Catalog re-analysis of GEO data. GEO accession ID is GSE61278. Compared fetal liver tissue to adult liver tissue of different individuals	None	DNA methylation	Age	Batch effects, cell composition (reference free)	Beta Values	None	Illumina HumanMethylation450	Fetal liver, adult liver	None	110	1	Adults	Both	European	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	1.041	0.18	0.00000011	None	25282492_Battram-T_age_ewas_catalog_re-analysis_of_geo_data__geo_accession_id_is_gse61278__compared_fetal_liver_tissue_to_adult_liver_tissue_of_different_individuals
De Jager PL	-	25129075	2014-08-17	Burden of neuritic amyloid plaques	EFO_0000249, EFO_0006801	Discovery model 1	Table S2	DNA methylation	Burden of neuritic amyloid plaques	Age, sex, study and technical covariates	Beta values	-	Illumina HumanMethylation450	Cerebral cortex	-	708	2	88	Both	European	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	1.7	0.3204	0.000000112	-	25129075_burden_of_neuritic_amyloid_plaques_discovery_model_1
Lunnon K	-	25129077	2014-08-17	Alzheimers disease Braak stage	EFO_0000249, EFO_0006801	Cross-cortex model	Table S9	DNA methylation	Alzheimers disease Braak stage	Age, sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Cross-cortex	-	104	1	-	Missing	None	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	-	-	0.00000397	-	25129077_alzheimers_disease_braak_stage_crosscortex_model
Robert F Hillary	Generation Scotland	10.1101/2023.01.10.23284387	9/6/2023	Incident Type 2 Diabetes	None	Basic model	https://doi.org/10.5281/zenodo.8021411	DNA methylation	Incident Type 2 Diabetes	Age, Sex, Cell composition (reference based)	M values	None	Illumina HumanMethylationEPIC	Whole blood	None	17749	1	Adults (18-65y)	Both	European	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	0.02	0.0046	0.000014	None	Robert-F-Hillary_Incident_Type_2_Diabetes_Basic_model
Everson TM	NNOVPI	31004082	2019-04-19	Optimal NICU Network Neurobehavioural Scale Profile	Orphanet_409944	None	Table S2	DNA methylation	Optimal NICU Network Neurobehavioural Scale Profile	Sex, postmenstrual age, cell composition (reference based)	Beta Values	None	Illumina HumanMethylationEPIC	Buccal cells	None	500	1	Infants	Both	Unclear	cg22962123	chr7:27153605	7	27153605	HOXA3	Island	-0.0066	0.0017	0.000066	None	31004082_Everson-TM_optimal_nicu_network_neurobehavioural_scale_profile